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  5. Smo186944

Smo186944


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.TBP-associated factor (MOT1)


Gene families : OG0003426 (Archaeplastida) Phylogenetic Tree(s): OG0003426_tree ,
OG_05_0005328 (LandPlants) Phylogenetic Tree(s): OG_05_0005328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo186944
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00235880 evm_27.TU.AmTr_v1... TATA-binding protein-associated factor BTAF1... 0.02 Archaeplastida
AT3G54280 BTAF1, RGD3,... DNA binding;ATP binding;nucleic acid... 0.07 Archaeplastida
Cre16.g687301 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
GSVIVT01019359001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.09 Archaeplastida
Gb_19667 No alias chromatin remodeling factor (Mot1). TATA box-binding... 0.05 Archaeplastida
LOC_Os02g06588.1 No alias chromatin remodeling factor (Mot1). TATA box-binding... 0.02 Archaeplastida
LOC_Os02g06592.1 No alias chromatin remodeling factor (Mot1). TATA box-binding... 0.02 Archaeplastida
MA_10431148g0010 No alias TATA-binding protein-associated factor BTAF1... 0.06 Archaeplastida
MA_139472g0010 No alias TATA-binding protein-associated factor BTAF1... 0.05 Archaeplastida
MA_79681g0010 No alias chromatin remodeling factor (Mot1). TATA box-binding... 0.11 Archaeplastida
Mp6g18490.1 No alias chromatin remodeling factor (Mot1). TATA box-binding... 0.03 Archaeplastida
Pp3c3_11220V3.1 No alias DNA binding;ATP binding;nucleic acid... 0.05 Archaeplastida
Solyc08g074510.1.1 No alias TATA-binding protein-associated factor BTAF1... 0.03 Archaeplastida
Solyc08g074520.2.1 No alias TATA-binding protein-associated factor BTAF1... 0.04 Archaeplastida
Zm00001e032564_P001 No alias chromatin remodeling factor (Mot1). TATA box-binding... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 1263 1557
No external refs found!