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  5. Smo19476

Smo19476


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP I/II transcription factor


Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo19476
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00215130 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00008p00214750 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01038619001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
Gb_04698 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
MA_10428916g0010 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
MA_130615g0020 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
MA_3688g0010 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Mp3g02320.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
Pp3c5_27150V3.1 No alias homeobox protein 16 0.03 Archaeplastida
Pp3c8_440V3.1 No alias homeobox 3 0.02 Archaeplastida
Solyc03g034120.3.1 No alias transcription factor (HD-ZIP I/II) 0.07 Archaeplastida
Zm00001e004226_P001 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 2 55
No external refs found!