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  5. Smo1983

Smo1983


Description : Pumilio homolog 1 OS=Arabidopsis thaliana


Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo1983
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00251030 evm_27.TU.AmTr_v1... Pumilio homolog 2 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT2G29140 PUM3, APUM3 pumilio 3 0.02 Archaeplastida
AT2G29190 APUM2, PUM2 pumilio 2 0.04 Archaeplastida
AT3G20250 PUM5, APUM5 pumilio 5 0.04 Archaeplastida
GSVIVT01016236001 No alias Pumilio homolog 4 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01016507001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01029553001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01031557001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_31285 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g62650.1 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_10159883g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10434828g0010 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_23070g0010 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_42218g0010 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_9025256g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp7g16700.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c3_36952V3.1 No alias pumilio 1 0.01 Archaeplastida
Pp3c3_36960V3.1 No alias pumilio 1 0.04 Archaeplastida
Pp3c8_2770V3.1 No alias pumilio 1 0.04 Archaeplastida
Solyc03g123980.4.1 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc06g076340.3.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e027653_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e029661_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 92 124
No external refs found!