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  4. Sequence
  5. Smo227198

Smo227198


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL18a component


Gene families : OG0001762 (Archaeplastida) Phylogenetic Tree(s): OG0001762_tree ,
OG_05_0001750 (LandPlants) Phylogenetic Tree(s): OG_05_0001750_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo227198
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00102800 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
AMTR_s00003p00234980 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
AT1G29965 No alias Ribosomal protein L18ae/LX family protein 0.05 Archaeplastida
AT2G34480 No alias Ribosomal protein L18ae/LX family protein 0.18 Archaeplastida
AT3G14600 No alias Ribosomal protein L18ae/LX family protein 0.16 Archaeplastida
Cpa|evm.model.tig00000615.59 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Cre01.g047750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
GSVIVT01000485001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
GSVIVT01021430001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
GSVIVT01021433001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Gb_05341 No alias component RPL18a of LSU proteome component 0.04 Archaeplastida
LOC_Os01g47660.1 No alias component RPL18a of LSU proteome component 0.15 Archaeplastida
LOC_Os01g54870.1 No alias component RPL18a of LSU proteome component 0.09 Archaeplastida
LOC_Os05g49030.1 No alias component RPL18a of LSU proteome component 0.11 Archaeplastida
MA_12029g0010 No alias component RPL18a of LSU proteome component 0.05 Archaeplastida
Mp1g17730.1 No alias component RPL18a of LSU proteome component 0.2 Archaeplastida
Pp3c12_7770V3.1 No alias Ribosomal protein L18ae/LX family protein 0.11 Archaeplastida
Pp3c13_12320V3.1 No alias Ribosomal protein L18ae/LX family protein 0.04 Archaeplastida
Pp3c20_15150V3.1 No alias Ribosomal protein L18ae/LX family protein 0.1 Archaeplastida
Pp3c24_18790V3.1 No alias Ribosomal protein L18ae/LX family protein 0.03 Archaeplastida
Pp3c3_11250V3.1 No alias Ribosomal protein L18ae/LX family protein 0.11 Archaeplastida
Pp3c8_13880V3.1 No alias Ribosomal protein L18ae/LX family protein 0.05 Archaeplastida
Solyc02g070640.3.1 No alias component RPL18a of LSU proteome component 0.05 Archaeplastida
Solyc02g070650.2.1 No alias component RPL18a of LSU proteome component 0.03 Archaeplastida
Solyc06g065590.4.1 No alias component RPL18a of LSU proteome component 0.08 Archaeplastida
Solyc08g016180.3.1 No alias component RPL18a of LSU proteome component 0.12 Archaeplastida
Zm00001e020218_P001 No alias component RPL18a of LSU proteome component 0.09 Archaeplastida
Zm00001e026540_P001 No alias component RPL18a of LSU proteome component 0.12 Archaeplastida
Zm00001e028015_P002 No alias component RPL18a of LSU proteome component 0.09 Archaeplastida
Zm00001e032436_P001 No alias component RPL18a of LSU proteome component 0.17 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR023573 Ribosomal_L18a//L18Ae/LX 6 127
No external refs found!