1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. Smo227221

Smo227221


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL37a component


Gene families : OG0001934 (Archaeplastida) Phylogenetic Tree(s): OG0001934_tree ,
OG_05_0002267 (LandPlants) Phylogenetic Tree(s): OG_05_0002267_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo227221
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00151080 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
AT3G60245 No alias Zinc-binding ribosomal protein family protein 0.14 Archaeplastida
Cpa|evm.model.tig00000718.64 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Cre06.g257150 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
GSVIVT01013278001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
GSVIVT01018328001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
Gb_13072 No alias component RPL37a of LSU proteome component 0.1 Archaeplastida
LOC_Os01g48770.2 No alias component RPL37a of LSU proteome component 0.07 Archaeplastida
LOC_Os05g48320.1 No alias component RPL37a of LSU proteome component 0.08 Archaeplastida
MA_158457g0010 No alias component RPL37a of LSU proteome component 0.05 Archaeplastida
MA_320643g0010 No alias no hits & (original description: none) 0.11 Archaeplastida
MA_4732g0010 No alias component RPL37a of LSU proteome component 0.02 Archaeplastida
Mp5g08340.1 No alias component RPL37a of LSU proteome component 0.02 Archaeplastida
Mp5g09590.1 No alias component RPL37a of LSU proteome component 0.03 Archaeplastida
Pp3c11_2550V3.1 No alias Zinc-binding ribosomal protein family protein 0.12 Archaeplastida
Pp3c1_1530V3.1 No alias Zinc-binding ribosomal protein family protein 0.12 Archaeplastida
Pp3c2_34770V3.1 No alias Zinc-binding ribosomal protein family protein 0.09 Archaeplastida
Pp3c3_1620V3.1 No alias Zinc-binding ribosomal protein family protein 0.1 Archaeplastida
Pp3c7_21150V3.1 No alias Zinc-binding ribosomal protein family protein 0.1 Archaeplastida
Solyc08g007140.4.1 No alias component RPL37a of LSU proteome component 0.02 Archaeplastida
Solyc08g077720.3.1 No alias component RPL37a of LSU proteome component 0.04 Archaeplastida
Zm00001e008395_P001 No alias component RPL37a of LSU proteome component 0.05 Archaeplastida
Zm00001e013684_P001 No alias component RPL37a of LSU proteome component 0.08 Archaeplastida
Zm00001e026482_P001 No alias component RPL37a of LSU proteome component 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002674 Ribosomal_L37ae 4 88
No external refs found!