1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00014p00111720

AMTR_s00014p00111720 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00014.40

Description : AAA-ATPase At3g50940 OS=Arabidopsis thaliana


Gene families : OG0000095 (Archaeplastida) Phylogenetic Tree(s): OG0000095_tree ,
OG_05_0007879 (LandPlants) Phylogenetic Tree(s): OG_05_0007879_tree ,
OG_06_0005074 (SeedPlants) Phylogenetic Tree(s): OG_06_0005074_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00014p00111720

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00244450 evm_27.TU.AmTr_v1... AAA-ATPase At3g28510 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00019p00244740 evm_27.TU.AmTr_v1... Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT3G28520 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Archaeplastida
AT4G30250 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
GSVIVT01008088001 No alias AAA-ATPase At3g28540 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01010371001 No alias AAA-ATPase At5g17760 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01023336001 No alias AAA-ATPase At3g28600 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01029202001 No alias AAA-ATPase At5g57480 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os01g40140.1 No alias AAA-ATPase At3g50940 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os03g02330.1 No alias AAA-ATPase At2g46620 OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os12g44190.1 No alias AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana... 0.01 Archaeplastida
MA_10435468g0010 No alias AAA-ATPase At3g28510 OS=Arabidopsis thaliana... 0.01 Archaeplastida
MA_56516g0010 No alias AAA-ATPase At3g28570, mitochondrial OS=Arabidopsis... 0.01 Archaeplastida
Smo75451 No alias AAA-ATPase At3g28600 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc03g082640.3.1 No alias AAA-ATPase At2g46620 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc05g015060.4.1 No alias AAA-ATPase At3g50940 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e026657_P001 No alias Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 4 52
No external refs found!