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  5. Smo229746

Smo229746


Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nop10 core component


Gene families : OG0008578 (Archaeplastida) Phylogenetic Tree(s): OG0008578_tree ,
OG_05_0009686 (LandPlants) Phylogenetic Tree(s): OG_05_0009686_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo229746
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AT2G20490 NOP10, EDA27 nucleolar RNA-binding Nop10p family protein 0.03 Archaeplastida
Cre05.g237700 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.01 Archaeplastida
GSVIVT01033693001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.02 Archaeplastida
Gb_06903 No alias core component Nop10 of H/ACA small nucleolar... 0.02 Archaeplastida
LOC_Os02g40514.2 No alias core component Nop10 of H/ACA small nucleolar... 0.04 Archaeplastida
Mp8g05770.1 No alias core component Nop10 of H/ACA small nucleolar... 0.04 Archaeplastida
Pp3c19_4700V3.1 No alias nucleolar RNA-binding Nop10p family protein 0.04 Archaeplastida
Solyc09g066500.4.1 No alias core component Nop10 of H/ACA small nucleolar... 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
CC GO:0005929 cilium IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
CC GO:0031514 motile cilium IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0042995 cell projection IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0120025 plasma membrane bounded cell projection IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007264 H/ACA_rnp_Nop10 3 52
No external refs found!