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Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm2 component
Gene families : OG0003406 (Archaeplastida) Phylogenetic Tree(s): OG0003406_tree ,
OG_05_0008218 (LandPlants) Phylogenetic Tree(s): OG_05_0008218_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo232056 | |
| Cluster | HCCA: Cluster_39 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00112530 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.02 | Archaeplastida | |
| AT1G03330 | No alias | Small nuclear ribonucleoprotein family protein | 0.03 | Archaeplastida | |
| Cpa|evm.model.tig00000663.16 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.01 | Archaeplastida | |
| Cre10.g441950 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.02 | Archaeplastida | |
| MA_790392g0010 | No alias | component LSm2 of U6-associated LSm accessory... | 0.03 | Archaeplastida | |
| Mp1g25280.1 | No alias | component LSm2 of U6-associated LSm accessory... | 0.02 | Archaeplastida | |
| Pp3c11_10290V3.1 | No alias | Small nuclear ribonucleoprotein family protein | 0.02 | Archaeplastida | |
| Pp3c2_19710V3.1 | No alias | Small nuclear ribonucleoprotein family protein | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
| MF | GO:0003714 | transcription corepressor activity | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005622 | intracellular | IEP | Neighborhood |
| CC | GO:0005739 | mitochondrion | IEP | Neighborhood |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
| BP | GO:0006405 | RNA export from nucleus | IEP | Neighborhood |
| BP | GO:0006406 | mRNA export from nucleus | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006886 | intracellular protein transport | IEP | Neighborhood |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
| BP | GO:0006914 | autophagy | IEP | Neighborhood |
| BP | GO:0008104 | protein localization | IEP | Neighborhood |
| CC | GO:0008250 | oligosaccharyltransferase complex | IEP | Neighborhood |
| MF | GO:0009055 | electron transfer activity | IEP | Neighborhood |
| BP | GO:0015031 | protein transport | IEP | Neighborhood |
| BP | GO:0015833 | peptide transport | IEP | Neighborhood |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | Neighborhood |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
| CC | GO:0034998 | oligosaccharyltransferase I complex | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| BP | GO:0042886 | amide transport | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044432 | endoplasmic reticulum part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0045184 | establishment of protein localization | IEP | Neighborhood |
| BP | GO:0046907 | intracellular transport | IEP | Neighborhood |
| BP | GO:0050657 | nucleic acid transport | IEP | Neighborhood |
| BP | GO:0050658 | RNA transport | IEP | Neighborhood |
| BP | GO:0051028 | mRNA transport | IEP | Neighborhood |
| BP | GO:0051168 | nuclear export | IEP | Neighborhood |
| BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
| BP | GO:0051236 | establishment of RNA localization | IEP | Neighborhood |
| BP | GO:0051641 | cellular localization | IEP | Neighborhood |
| BP | GO:0051649 | establishment of localization in cell | IEP | Neighborhood |
| BP | GO:0061919 | process utilizing autophagic mechanism | IEP | Neighborhood |
| BP | GO:0071702 | organic substance transport | IEP | Neighborhood |
| BP | GO:0071705 | nitrogen compound transport | IEP | Neighborhood |
| CC | GO:0098796 | membrane protein complex | IEP | Neighborhood |
| MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
| CC | GO:1902494 | catalytic complex | IEP | Neighborhood |
| CC | GO:1990234 | transferase complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 7 | 71 |
| No external refs found! |