Smo233605

Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana

Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0004210 (LandPlants) Phylogenetic Tree(s): OG_05_0004210_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo233605
Cluster	HCCA: Cluster_179

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00074370	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome...	0.03	Archaeplastida
AT3G26560	No alias	ATP-dependent RNA helicase, putative	0.02	Archaeplastida
LOC_Os07g32430.1	No alias	RNA helicase (Prp16)	0.03	Archaeplastida
Solyc01g079250.3.1	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.03	Archaeplastida
Zm00001e014112_P001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011709	DUF1605	433	511

External Links

No external refs found!