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  4. Sequence
  5. Smo266648

Smo266648


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13 component


Gene families : OG0002427 (Archaeplastida) Phylogenetic Tree(s): OG0002427_tree ,
OG_05_0002444 (LandPlants) Phylogenetic Tree(s): OG_05_0002444_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo266648
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00239970 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
AMTR_s00029p00111280 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
AT3G49010 BBC1, RSU2, ATBBC1 breast basic conserved 1 0.19 Archaeplastida
AT5G23900 No alias Ribosomal protein L13e family protein 0.1 Archaeplastida
Cpa|evm.model.tig00020629.36 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
Cre14.g630100 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
GSVIVT01027212001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
GSVIVT01030767001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
LOC_Os03g37970.1 No alias component RPL13 of LSU proteome component 0.07 Archaeplastida
LOC_Os06g02510.2 No alias component RPL13 of LSU proteome component 0.16 Archaeplastida
MA_103031g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
MA_10430790g0030 No alias component RPL13 of LSU proteome component 0.04 Archaeplastida
Mp1g04920.1 No alias component RPL13 of LSU proteome component 0.18 Archaeplastida
Mp2g19790.1 No alias component RPL13 of LSU proteome component 0.17 Archaeplastida
Pp3c10_7370V3.1 No alias breast basic conserved 1 0.07 Archaeplastida
Pp3c13_15900V3.1 No alias breast basic conserved 1 0.13 Archaeplastida
Pp3c1_26280V3.1 No alias breast basic conserved 1 0.19 Archaeplastida
Pp3c3_21130V3.1 No alias breast basic conserved 1 0.04 Archaeplastida
Solyc08g075700.3.1 No alias component RPL13 of LSU proteome component 0.2 Archaeplastida
Solyc12g096150.2.1 No alias component RPL13 of LSU proteome component 0.15 Archaeplastida
Zm00001e018804_P001 No alias component RPL13 of LSU proteome component 0.15 Archaeplastida
Zm00001e028430_P003 No alias component RPL13 of LSU proteome component 0.15 Archaeplastida
Zm00001e031172_P001 No alias component RPL13 of LSU proteome component 0.08 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 7 185
No external refs found!