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  5. Smo268639

Smo268639


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS11 component


Gene families : OG0002226 (Archaeplastida) Phylogenetic Tree(s): OG0002226_tree ,
OG_05_0002056 (LandPlants) Phylogenetic Tree(s): OG_05_0002056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo268639
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00158320 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
AMTR_s00046p00028310 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
AT3G48930 EMB1080 Nucleic acid-binding, OB-fold-like protein 0.27 Archaeplastida
AT4G30800 No alias Nucleic acid-binding, OB-fold-like protein 0.08 Archaeplastida
AT5G23740 RPS11-BETA ribosomal protein S11-beta 0.21 Archaeplastida
Cpa|evm.model.tig00000551.22 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
Cre12.g514500 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 Archaeplastida
GSVIVT01012877001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
GSVIVT01035927001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 Archaeplastida
Gb_14912 No alias component RPS11 of SSU proteome 0.12 Archaeplastida
Gb_27579 No alias component RPS11 of SSU proteome 0.04 Archaeplastida
LOC_Os04g42380.1 No alias component RPS11 of SSU proteome 0.03 Archaeplastida
LOC_Os04g52361.1 No alias component RPS11 of SSU proteome 0.22 Archaeplastida
LOC_Os08g10608.1 No alias component RPS11 of SSU proteome 0.18 Archaeplastida
MA_19350g0010 No alias component RPS11 of SSU proteome 0.24 Archaeplastida
Mp4g23360.1 No alias component RPS11 of SSU proteome 0.19 Archaeplastida
Mp6g10500.1 No alias component RPS11 of SSU proteome 0.21 Archaeplastida
Pp3c14_9600V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.25 Archaeplastida
Pp3c1_27980V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.23 Archaeplastida
Pp3c2_13690V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.2 Archaeplastida
Pp3s116_30V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.21 Archaeplastida
Solyc06g073790.3.1 No alias component RPS11 of SSU proteome 0.19 Archaeplastida
Solyc06g073800.3.1 No alias component RPS11 of SSU proteome 0.17 Archaeplastida
Solyc12g042080.2.1 No alias component RPS11 of SSU proteome 0.21 Archaeplastida
Zm00001e006955_P001 No alias component RPS11 of SSU proteome 0.19 Archaeplastida
Zm00001e041635_P001 No alias component RPS11 of SSU proteome 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
CC GO:0030008 TRAPP complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 74 142
No external refs found!