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  5. Smo269009

Smo269009


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL9 component


Gene families : OG0002651 (Archaeplastida) Phylogenetic Tree(s): OG0002651_tree ,
OG_05_0002585 (LandPlants) Phylogenetic Tree(s): OG_05_0002585_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo269009
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00131950 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
AMTR_s00048p00062300 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
AT1G33120 No alias Ribosomal protein L6 family 0.13 Archaeplastida
AT1G33140 PGY2 Ribosomal protein L6 family 0.15 Archaeplastida
AT4G10450 No alias Ribosomal protein L6 family 0.1 Archaeplastida
Cpa|evm.model.tig00001532.12 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
Cre12.g494050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
GSVIVT01016795001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
GSVIVT01038670001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Gb_36692 No alias component RPL9 of LSU proteome component 0.02 Archaeplastida
LOC_Os02g01332.1 No alias component RPL9 of LSU proteome component 0.06 Archaeplastida
LOC_Os09g31180.1 No alias component RPL9 of LSU proteome component 0.15 Archaeplastida
MA_38141g0010 No alias component RPL9 of LSU proteome component 0.05 Archaeplastida
Mp4g24070.1 No alias component RPL9 of LSU proteome component 0.18 Archaeplastida
Pp3c10_8500V3.1 No alias Ribosomal protein L6 family 0.09 Archaeplastida
Pp3c14_8600V3.1 No alias Ribosomal protein L6 family 0.11 Archaeplastida
Pp3c16_20070V3.1 No alias Ribosomal protein L6 family 0.11 Archaeplastida
Pp3c27_8190V3.1 No alias Ribosomal protein L6 family 0.14 Archaeplastida
Solyc06g073310.3.1 No alias component RPL9 of LSU proteome component 0.2 Archaeplastida
Solyc08g014550.3.1 No alias component RPL9 of LSU proteome component 0.08 Archaeplastida
Solyc12g096700.2.1 No alias component RPL9 of LSU proteome component 0.14 Archaeplastida
Zm00001e025404_P001 No alias component RPL9 of LSU proteome component 0.09 Archaeplastida
Zm00001e029810_P003 No alias component RPL9 of LSU proteome component 0.14 Archaeplastida
Zm00001e036699_P002 No alias component RPL9 of LSU proteome component 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004017 adenylate kinase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0050145 nucleoside monophosphate kinase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 103 177
No external refs found!