1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. Smo270686

Smo270686


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL6 component


Gene families : OG0002580 (Archaeplastida) Phylogenetic Tree(s): OG0002580_tree ,
OG_05_0002755 (LandPlants) Phylogenetic Tree(s): OG_05_0002755_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo270686
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00218700 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
AT1G18540 No alias Ribosomal protein L6 family protein 0.3 Archaeplastida
AT1G74050 No alias Ribosomal protein L6 family protein 0.09 Archaeplastida
AT1G74060 No alias Ribosomal protein L6 family protein 0.13 Archaeplastida
Cpa|evm.model.tig00021127.127 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Cre01.g011000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
GSVIVT01032041001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
GSVIVT01033532001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 Archaeplastida
Gb_01604 No alias component RPL6 of LSU proteome component 0.13 Archaeplastida
LOC_Os02g37862.1 No alias component RPL6 of LSU proteome component 0.17 Archaeplastida
LOC_Os04g39700.1 No alias component RPL6 of LSU proteome component 0.2 Archaeplastida
MA_108607g0010 No alias component RPL6 of LSU proteome component 0.24 Archaeplastida
Mp3g11670.1 No alias component RPL6 of LSU proteome component 0.28 Archaeplastida
Pp3c14_4100V3.1 No alias Ribosomal protein L6 family protein 0.12 Archaeplastida
Pp3c14_4160V3.1 No alias Ribosomal protein L6 family protein 0.2 Archaeplastida
Pp3c1_24300V3.1 No alias Ribosomal protein L6 family protein 0.09 Archaeplastida
Pp3c2_13300V3.1 No alias Ribosomal protein L6 family protein 0.1 Archaeplastida
Solyc04g014720.4.1 No alias component RPL6 of LSU proteome component 0.11 Archaeplastida
Solyc05g054070.4.1 No alias component RPL6 of LSU proteome component 0.06 Archaeplastida
Solyc11g012110.2.1 No alias component RPL6 of LSU proteome component 0.16 Archaeplastida
Zm00001e014979_P001 No alias component RPL6 of LSU proteome component 0.18 Archaeplastida
Zm00001e022840_P001 No alias component RPL6 of LSU proteome component 0.19 Archaeplastida
Zm00001e022841_P001 No alias component RPL6 of LSU proteome component 0.16 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 78 173
No external refs found!