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  5. Smo270706

Smo270706


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL3 component


Gene families : OG0002284 (Archaeplastida) Phylogenetic Tree(s): OG0002284_tree ,
OG_05_0002131 (LandPlants) Phylogenetic Tree(s): OG_05_0002131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo270706
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00269670 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
AMTR_s00060p00174830 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
AMTR_s00135p00091990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
AT1G43170 RP1, RPL3A, emb2207, ARP1 ribosomal protein 1 0.14 Archaeplastida
Cpa|evm.model.tig00000025.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Cre10.g417700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
GSVIVT01023241001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
GSVIVT01034555001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Gb_35746 No alias component RPL3 of LSU proteome component 0.07 Archaeplastida
LOC_Os11g06750.1 No alias component RPL3 of LSU proteome component 0.13 Archaeplastida
LOC_Os12g07010.1 No alias component RPL3 of LSU proteome component 0.14 Archaeplastida
MA_10432758g0010 No alias component RPL3 of LSU proteome component 0.09 Archaeplastida
MA_124178g0010 No alias component RPL3 of LSU proteome component 0.07 Archaeplastida
Mp1g18990.1 No alias component RPL3 of LSU proteome component 0.13 Archaeplastida
Pp3c10_25460V3.1 No alias R-protein L3 B 0.05 Archaeplastida
Pp3c5_27000V3.1 No alias R-protein L3 B 0.03 Archaeplastida
Pp3c5_27030V3.1 No alias R-protein L3 B 0.05 Archaeplastida
Solyc01g104590.3.1 No alias component RPL3 of LSU proteome component 0.14 Archaeplastida
Zm00001e001224_P002 No alias component RPL3 of LSU proteome component 0.07 Archaeplastida
Zm00001e008122_P001 No alias component RPL3 of LSU proteome component 0.04 Archaeplastida
Zm00001e008127_P001 No alias component RPL3 of LSU proteome component 0.07 Archaeplastida
Zm00001e009061_P001 No alias component RPL3 of LSU proteome component 0.05 Archaeplastida
Zm00001e009065_P002 No alias component RPL3 of LSU proteome component 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0070403 NAD+ binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 1 370
No external refs found!