AMTR_s00015p00252960 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00015.106

Description : RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor

Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0006432 (LandPlants) Phylogenetic Tree(s): OG_05_0006432_tree ,
OG_06_0007444 (SeedPlants) Phylogenetic Tree(s): OG_06_0007444_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00015p00252960
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
AT1G64860	SIGB, SIG2,...	sigma factor A	0.05	Archaeplastida
AT3G53920	SIGC, SIG3	RNApolymerase sigma-subunit C	0.03	Archaeplastida
AT5G24120	ATSIG5, SIG5, SIGE	sigma factor E	0.03	Archaeplastida
GSVIVT01024261001	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
GSVIVT01028717001	No alias	RNA biosynthesis.organelle...	0.04	Archaeplastida
Gb_03878	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Gb_40730	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
LOC_Os05g50930.1	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
LOC_Os05g51150.1	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
MA_10382339g0010	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
MA_10428665g0010	No alias	RNA polymerase sigma factor sigE,...	0.04	Archaeplastida
Mp7g15030.1	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
Pp3c14_22330V3.1	No alias	RNApolymerase sigma subunit 2	0.02	Archaeplastida
Pp3c22_18520V3.1	No alias	sigma factor E	0.02	Archaeplastida
Pp3c2_5110V3.1	No alias	RNApolymerase sigma subunit 2	0.01	Archaeplastida
Smo147096	No alias	RNA biosynthesis.organelle...	0.03	Archaeplastida
Solyc01g081490.3.1	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
Solyc03g007370.3.1	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
Solyc03g097320.3.1	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Zm00001e021683_P001	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Zm00001e032596_P002	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016987	sigma factor activity	IEA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003913	DNA photolyase activity	IEP	Neighborhood
MF	GO:0004096	catalase activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0050308	sugar-phosphatase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007630	RNA_pol_sigma70_r4	63	116

External Links

No external refs found!

AMTR_s00015p00252960 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation