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Description : DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).DNA resection MRE11-RAD50-NBS1 (MRN) complex.RAD50 component
Gene families : OG0005485 (Archaeplastida) Phylogenetic Tree(s): OG0005485_tree ,
OG_05_0008197 (LandPlants) Phylogenetic Tree(s): OG_05_0008197_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo405818 | |
| Cluster | HCCA: Cluster_201 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00013p00258230 | evm_27.TU.AmTr_v1... | DNA damage response.DNA repair mechanisms.homologous... | 0.03 | Archaeplastida | |
| AT2G31970 | RAD50, ATRAD50 | DNA repair-recombination protein (RAD50) | 0.05 | Archaeplastida | |
| Gb_12673 | No alias | component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... | 0.03 | Archaeplastida | |
| Mp5g04390.1 | No alias | component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... | 0.06 | Archaeplastida | |
| Pp3c10_3760V3.1 | No alias | DNA repair-recombination protein (RAD50) | 0.02 | Archaeplastida | |
| Solyc05g053800.3.1 | No alias | component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... | 0.04 | Archaeplastida | |
| Zm00001e022614_P001 | No alias | component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000149 | SNARE binding | IEP | Neighborhood |
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| CC | GO:0000776 | kinetochore | IEP | Neighborhood |
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003980 | UDP-glucose:glycoprotein glucosyltransferase activity | IEP | Neighborhood |
| MF | GO:0004386 | helicase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005929 | cilium | IEP | Neighborhood |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | Neighborhood |
| BP | GO:0006013 | mannose metabolic process | IEP | Neighborhood |
| BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| BP | GO:0009229 | thiamine diphosphate biosynthetic process | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | Neighborhood |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| BP | GO:0019318 | hexose metabolic process | IEP | Neighborhood |
| MF | GO:0019905 | syntaxin binding | IEP | Neighborhood |
| BP | GO:0022607 | cellular component assembly | IEP | Neighborhood |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
| CC | GO:0030173 | integral component of Golgi membrane | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| CC | GO:0031228 | intrinsic component of Golgi membrane | IEP | Neighborhood |
| CC | GO:0031300 | intrinsic component of organelle membrane | IEP | Neighborhood |
| CC | GO:0031301 | integral component of organelle membrane | IEP | Neighborhood |
| CC | GO:0031514 | motile cilium | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| BP | GO:0042357 | thiamine diphosphate metabolic process | IEP | Neighborhood |
| CC | GO:0042995 | cell projection | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043248 | proteasome assembly | IEP | Neighborhood |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Neighborhood |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044427 | chromosomal part | IEP | Neighborhood |
| CC | GO:0044431 | Golgi apparatus part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0046527 | glucosyltransferase activity | IEP | Neighborhood |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Neighborhood |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| CC | GO:0120025 | plasma membrane bounded cell projection | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |