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Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.125
Description : Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR regulation.LIR1 protein
Gene families : OG0009438 (Archaeplastida) Phylogenetic Tree(s): OG0009438_tree ,
OG_05_0010162 (LandPlants) Phylogenetic Tree(s): OG_05_0010162_tree ,
OG_06_0010849 (SeedPlants) Phylogenetic Tree(s): OG_06_0010849_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00016p00166750 | |
| Cluster | HCCA: Cluster_173 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GSVIVT01004944001 | No alias | Photosynthesis.photophosphorylation.linear electron... | 0.03 | Archaeplastida | |
| LOC_Os01g01340.1 | No alias | LIR1 protein involved in ferredoxin-NADP oxidoreductase... | 0.05 | Archaeplastida | |
| MA_229452g0010 | No alias | LIR1 protein involved in ferredoxin-NADP oxidoreductase... | 0.02 | Archaeplastida | |
| Smo444139 | No alias | Photosynthesis.photophosphorylation.linear electron... | 0.02 | Archaeplastida | |
| Zm00001e017178_P001 | No alias | LIR1 protein involved in ferredoxin-NADP oxidoreductase... | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
| CC | GO:0005849 | mRNA cleavage factor complex | IEP | Neighborhood |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Neighborhood |
| BP | GO:0006378 | mRNA polyadenylation | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
| BP | GO:0006766 | vitamin metabolic process | IEP | Neighborhood |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Neighborhood |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Neighborhood |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0008219 | cell death | IEP | Neighborhood |
| MF | GO:0008703 | 5-amino-6-(5-phosphoribosylamino)uracil reductase activity | IEP | Neighborhood |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | Neighborhood |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016740 | transferase activity | IEP | Neighborhood |
| MF | GO:0016987 | sigma factor activity | IEP | Neighborhood |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Neighborhood |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0043631 | RNA polyadenylation | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR009856 | Lir1 | 26 | 125 |
| No external refs found! |