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  5. AMTR_s00016p00252940

AMTR_s00016p00252940 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.310

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL21 component


Gene families : OG0001742 (Archaeplastida) Phylogenetic Tree(s): OG0001742_tree ,
OG_05_0002541 (LandPlants) Phylogenetic Tree(s): OG_05_0002541_tree ,
OG_06_0002619 (SeedPlants) Phylogenetic Tree(s): OG_06_0002619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00252940
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT1G09590 No alias Translation protein SH3-like family protein 0.23 Archaeplastida
AT1G09690 No alias Translation protein SH3-like family protein 0.22 Archaeplastida
AT1G57660 No alias Translation protein SH3-like family protein 0.17 Archaeplastida
Cpa|evm.model.tig00000640.5 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 Archaeplastida
Cre06.g278135 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 Archaeplastida
GSVIVT01001130001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
GSVIVT01033444001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
GSVIVT01033455001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
Gb_09077 No alias component RPL21 of LSU proteome component 0.08 Archaeplastida
LOC_Os03g04750.1 No alias component RPL21 of LSU proteome component 0.26 Archaeplastida
LOC_Os10g32820.1 No alias component RPL21 of LSU proteome component 0.12 Archaeplastida
MA_186351g0010 No alias component RPL21 of LSU proteome component 0.09 Archaeplastida
MA_40819g0010 No alias component RPL21 of LSU proteome component 0.03 Archaeplastida
Mp6g01390.1 No alias component RPL21 of LSU proteome component 0.24 Archaeplastida
Pp3c12_9320V3.1 No alias Translation protein SH3-like family protein 0.2 Archaeplastida
Pp3c13_2360V3.1 No alias Translation protein SH3-like family protein 0.2 Archaeplastida
Pp3c3_5550V3.1 No alias Translation protein SH3-like family protein 0.21 Archaeplastida
Pp3c4_21520V3.1 No alias Translation protein SH3-like family protein 0.18 Archaeplastida
Smo170832 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Solyc10g078960.2.1 No alias component RPL21 of LSU proteome component 0.19 Archaeplastida
Solyc10g080590.2.1 No alias component RPL21 of LSU proteome component 0.13 Archaeplastida
Zm00001e000341_P001 No alias component RPL21 of LSU proteome component 0.14 Archaeplastida
Zm00001e004623_P001 No alias component RPL21 of LSU proteome component 0.11 Archaeplastida
Zm00001e012727_P001 No alias component RPL21 of LSU proteome component 0.14 Archaeplastida
Zm00001e038963_P001 No alias component RPL21 of LSU proteome component 0.15 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
MF GO:0004866 endopeptidase inhibitor activity IEP Neighborhood
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016531 copper chaperone activity IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030414 peptidase inhibitor activity IEP Neighborhood
MF GO:0030955 potassium ion binding IEP Neighborhood
MF GO:0031420 alkali metal ion binding IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0061134 peptidase regulator activity IEP Neighborhood
MF GO:0061135 endopeptidase regulator activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001147 Ribosomal_L21e 4 99
No external refs found!