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  5. AMTR_s00017p00035550

AMTR_s00017p00035550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00017.13

Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG0000415 (Archaeplastida) Phylogenetic Tree(s): OG0000415_tree ,
OG_05_0000215 (LandPlants) Phylogenetic Tree(s): OG_05_0000215_tree ,
OG_06_0000299 (SeedPlants) Phylogenetic Tree(s): OG_06_0000299_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00017p00035550
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT1G72010 No alias TCP family transcription factor 0.02 Archaeplastida
LOC_Os01g14380.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os08g43160.1 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os12g07480.1 No alias transcription factor (TCP) 0.02 Archaeplastida
MA_635g0010 No alias transcription factor (TCP) 0.02 Archaeplastida
MA_96244g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc01g103780.4.1 No alias transcription factor (TCP) 0.04 Archaeplastida
Solyc09g008030.1.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc11g020670.1.1 No alias transcription factor (TCP) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR005333 Transcription_factor_TCP 111 216
No external refs found!