AMTR_s00017p00094950 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00017.35

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS27a component

Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree ,
OG_06_0000087 (SeedPlants) Phylogenetic Tree(s): OG_06_0000087_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00017p00094950
Cluster	HCCA: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method
AT1G23410	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.05	Archaeplastida
AT2G36170	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.2	Archaeplastida
AT2G47110	UBQ6	ubiquitin 6	0.26	Archaeplastida
AT3G52590	UBQ1, EMB2167,...	ubiquitin extension protein 1	0.26	Archaeplastida
AT3G62250	UBQ5	ubiquitin 5	0.26	Archaeplastida
Cpa\|evm.model.tig00022075.50	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
Cre01.g007051	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	Archaeplastida
Cre06.g273600	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.25	Archaeplastida
GSVIVT01012906001	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.09	Archaeplastida
GSVIVT01022543001	No alias	Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum	0.04	Archaeplastida
GSVIVT01028198001	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.08	Archaeplastida
GSVIVT01033876001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
GSVIVT01038617001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	Archaeplastida
Gb_01257	No alias	component RPL40 of LSU proteome component	0.05	Archaeplastida
Gb_15027	No alias	component RPS27a of SSU proteome	0.18	Archaeplastida
Gb_40288	No alias	component RPS27a of SSU proteome	0.11	Archaeplastida
Gb_41257	No alias	component RPL40 of LSU proteome component	0.15	Archaeplastida
LOC_Os01g22490.1	No alias	component RPS27a of SSU proteome	0.1	Archaeplastida
LOC_Os02g06640.1	No alias	ubiquitin-fold protein (UBQ)	0.02	Archaeplastida
LOC_Os03g13170.1	No alias	component RPL40 of LSU proteome component	0.12	Archaeplastida
LOC_Os05g06770.1	No alias	component RPS27a of SSU proteome	0.09	Archaeplastida
LOC_Os06g44080.1	No alias	ubiquitin-fold protein (RUB)	0.06	Archaeplastida
LOC_Os09g39500.1	No alias	component RPL40 of LSU proteome component	0.13	Archaeplastida
MA_10435699g0020	No alias	component RPS27a of SSU proteome	0.06	Archaeplastida
MA_13101g0020	No alias	component RPL40 of LSU proteome component	0.13	Archaeplastida
MA_455989g0010	No alias	ubiquitin-fold protein (RUB)	0.02	Archaeplastida
MA_529552g0010	No alias	component RPS27a of SSU proteome	0.18	Archaeplastida
MA_9129425g0010	No alias	component RPL40 of LSU proteome component	0.08	Archaeplastida
Mp4g02760.1	No alias	Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare...	0.02	Archaeplastida
Mp7g12490.1	No alias	component RPL40 of LSU proteome component	0.02	Archaeplastida
Mp7g12760.1	No alias	component RPS27a of SSU proteome	0.03	Archaeplastida
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.26	Archaeplastida
Mp8g11720.1	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis...	0.02	Archaeplastida
Pp3c10_25270V3.1	No alias	ubiquitin extension protein 1	0.22	Archaeplastida
Pp3c12_5640V3.1	No alias	ubiquitin 6	0.17	Archaeplastida
Pp3c12_5760V3.1	No alias	ubiquitin 6	0.19	Archaeplastida
Pp3c20_23170V3.1	No alias	ubiquitin extension protein 1	0.2	Archaeplastida
Pp3c24_430V3.1	No alias	ubiquitin extension protein 1	0.16	Archaeplastida
Pp3c3_25480V3.1	No alias	ubiquitin extension protein 1	0.19	Archaeplastida
Pp3c4_11930V3.1	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.17	Archaeplastida
Pp3c4_19000V3.1	No alias	ubiquitin 6	0.23	Archaeplastida
Pp3c8_14230V3.1	No alias	ubiquitin 6	0.14	Archaeplastida
Smo111605	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	Archaeplastida
Smo93613	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.02	Archaeplastida
Solyc01g068045.1.1	No alias	component RPS27a of SSU proteome	0.14	Archaeplastida
Solyc01g096290.4.1	No alias	no hits & (original description: none)	0.14	Archaeplastida
Solyc03g082570.4.1	No alias	component RPL40 of LSU proteome component	0.21	Archaeplastida
Solyc08g008590.4.1	No alias	component RPL40 of LSU proteome component	0.07	Archaeplastida
Solyc08g083120.3.1	No alias	component RPL40 of LSU proteome component	0.21	Archaeplastida
Solyc12g098940.2.1	No alias	component RPS27a of SSU proteome	0.15	Archaeplastida
Solyc12g099025.1.1	No alias	component RPS27a of SSU proteome	0.11	Archaeplastida
Zm00001e000962_P001	No alias	component RPL40 of LSU proteome component	0.07	Archaeplastida
Zm00001e000965_P001	No alias	component RPL40 of LSU proteome component	0.02	Archaeplastida
Zm00001e009474_P001	No alias	component RPL40 of LSU proteome component	0.16	Archaeplastida
Zm00001e026237_P001	No alias	component RPS27a of SSU proteome	0.15	Archaeplastida
Zm00001e028916_P001	No alias	component RPS27a of SSU proteome	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006621	protein retention in ER lumen	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
CC	GO:0016272	prefoldin complex	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	Neighborhood
BP	GO:0032507	maintenance of protein location in cell	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
BP	GO:0045185	maintenance of protein location	IEP	Neighborhood
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
MF	GO:0046923	ER retention sequence binding	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051651	maintenance of location in cell	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin_dom	6	74
IPR002906	Ribosomal_S27a	102	147

External Links

No external refs found!

AMTR_s00017p00094950 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation