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Aliases : evm_27.TU.AmTr_v1.0_scaffold00017.219
Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor
Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0000055 (LandPlants) Phylogenetic Tree(s): OG_05_0000055_tree ,
OG_06_0000244 (SeedPlants) Phylogenetic Tree(s): OG_06_0000244_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00017p00242860 | |
| Cluster | HCCA: Cluster_113 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00039p00112210 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.C2C2... | 0.04 | Archaeplastida | |
| AT3G24050 | GATA1 | GATA transcription factor 1 | 0.04 | Archaeplastida | |
| AT3G54810 | BME3-ZF, BME3, GATA8 | Plant-specific GATA-type zinc finger transcription... | 0.07 | Archaeplastida | |
| AT3G60530 | GATA4 | GATA transcription factor 4 | 0.02 | Archaeplastida | |
| AT4G34680 | GATA3 | GATA transcription factor 3 | 0.04 | Archaeplastida | |
| AT5G26930 | GATA23 | GATA transcription factor 23 | 0.05 | Archaeplastida | |
| Cre01.g025050 | No alias | RNA biosynthesis.transcriptional activation.C2C2... | 0.02 | Archaeplastida | |
| GSVIVT01018180001 | No alias | RNA biosynthesis.transcriptional activation.C2C2... | 0.03 | Archaeplastida | |
| GSVIVT01018833001 | No alias | RNA biosynthesis.transcriptional activation.C2C2... | 0.03 | Archaeplastida | |
| Gb_24250 | No alias | transcription factor (GATA) | 0.03 | Archaeplastida | |
| Gb_25568 | No alias | transcription factor (GATA) | 0.02 | Archaeplastida | |
| LOC_Os01g54210.1 | No alias | transcription factor (GATA) | 0.04 | Archaeplastida | |
| LOC_Os02g12790.1 | No alias | transcription factor (GATA) | 0.03 | Archaeplastida | |
| LOC_Os02g56250.1 | No alias | transcription factor (GATA) | 0.03 | Archaeplastida | |
| LOC_Os03g05160.1 | No alias | transcription factor (GATA) | 0.03 | Archaeplastida | |
| LOC_Os05g49280.1 | No alias | transcription factor (GATA) | 0.04 | Archaeplastida | |
| LOC_Os09g08150.1 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| LOC_Os10g32070.1 | No alias | transcription factor (GATA) | 0.02 | Archaeplastida | |
| LOC_Os12g07120.1 | No alias | transcription factor (GATA) | 0.04 | Archaeplastida | |
| MA_103421g0030 | No alias | transcription factor (GATA) | 0.05 | Archaeplastida | |
| MA_44185g0010 | No alias | transcription factor (GATA) | 0.04 | Archaeplastida | |
| Pp3c21_15110V3.1 | No alias | GATA transcription factor 19 | 0.04 | Archaeplastida | |
| Pp3c3_25840V3.1 | No alias | No annotation | 0.04 | Archaeplastida | |
| Solyc01g110310.3.1 | No alias | transcription factor (GATA) | 0.04 | Archaeplastida | |
| Solyc02g062760.4.1 | No alias | transcription factor (GATA) | 0.04 | Archaeplastida | |
| Solyc04g015360.3.1 | No alias | transcription factor (GATA) | 0.03 | Archaeplastida | |
| Solyc05g053500.4.1 | No alias | transcription factor (GATA) | 0.07 | Archaeplastida | |
| Solyc09g075610.3.1 | No alias | transcription factor (GATA) | 0.04 | Archaeplastida | |
| Zm00001e005940_P001 | No alias | transcription factor (GATA) | 0.03 | Archaeplastida | |
| Zm00001e016165_P001 | No alias | transcription factor (GATA) | 0.03 | Archaeplastida | |
| Zm00001e027439_P001 | No alias | transcription factor (GATA) | 0.03 | Archaeplastida | |
| Zm00001e032513_P001 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| Zm00001e038971_P001 | No alias | transcription factor (GATA) | 0.06 | Archaeplastida | |
| Zm00001e039468_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Zm00001e039469_P001 | No alias | transcription factor (GATA) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEA | Interproscan |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | Interproscan |
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| MF | GO:0043565 | sequence-specific DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
| MF | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity | IEP | Neighborhood |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Neighborhood |
| MF | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | IEP | Neighborhood |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Neighborhood |
| BP | GO:0051259 | protein complex oligomerization | IEP | Neighborhood |
| BP | GO:0051260 | protein homooligomerization | IEP | Neighborhood |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000679 | Znf_GATA | 126 | 159 |
| No external refs found! |