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  5. Smo428242

Smo428242


Description : Chromatin organisation.histone modifications.histone deacetylation.HD2 histone deacetylase


Gene families : OG0001808 (Archaeplastida) Phylogenetic Tree(s): OG0001808_tree ,
OG_05_0001598 (LandPlants) Phylogenetic Tree(s): OG_05_0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo428242
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AT2G27840 HDA13, HDT04, HDT4 histone deacetylase-related / HD-related 0.03 Archaeplastida
AT3G44750 HDA3, ATHD2A, HDT1, HD2A histone deacetylase 3 0.03 Archaeplastida
Cpa|evm.model.tig00000388.65 No alias Protein modification.protein folding and quality... 0.01 Archaeplastida
GSVIVT01031404001 No alias Chromatin organisation.histone modifications.histone... 0.04 Archaeplastida
LOC_Os05g51830.1 No alias histone deacetylase (HDT/HD2) 0.04 Archaeplastida
Pp3c1_23930V3.1 No alias histone deacetylase 3 0.02 Archaeplastida
Pp3c2_6080V3.1 No alias histone deacetylase 3 0.03 Archaeplastida
Solyc09g009030.4.1 No alias histone deacetylase (HDT/HD2) 0.03 Archaeplastida
Zm00001e018891_P001 No alias histone deacetylase (HDT/HD2) 0.02 Archaeplastida
Zm00001e027707_P004 No alias histone deacetylase (HDT/HD2) 0.05 Archaeplastida
Zm00001e028512_P001 No alias histone deacetylase (HDT/HD2) 0.03 Archaeplastida
Zm00001e032246_P002 No alias histone deacetylase (HDT/HD2) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004017 adenylate kinase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0050145 nucleoside monophosphate kinase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!