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  5. AMTR_s00018p00040300

AMTR_s00018p00040300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00018.9

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.RAV/NGATHA transcription factor


Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0000986 (SeedPlants) Phylogenetic Tree(s): OG_06_0000986_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00018p00040300
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00238950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 Archaeplastida
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.06 Archaeplastida
GSVIVT01011947001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01019699001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
LOC_Os01g04800.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 Archaeplastida
LOC_Os01g49830.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
LOC_Os06g01860.1 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida
LOC_Os08g06120.1 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida
LOC_Os10g39190.1 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
LOC_Os12g06080.1 No alias transcription factor (RAV/NGATHA) 0.07 Archaeplastida
MA_178646g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.05 Archaeplastida
MA_3503583g0010 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
MA_70029g0010 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
Pp3c1_16700V3.1 No alias related to ABI3/VP1 1 0.02 Archaeplastida
Pp3c2_23660V3.1 No alias AP2/B3 transcription factor family protein 0.02 Archaeplastida
Solyc05g009790.1.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
Zm00001e000156_P001 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
Zm00001e026443_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 17 108
No external refs found!