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  5. AMTR_s00018p00131950

AMTR_s00018p00131950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00018.62

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL9 component


Gene families : OG0002651 (Archaeplastida) Phylogenetic Tree(s): OG0002651_tree ,
OG_05_0002585 (LandPlants) Phylogenetic Tree(s): OG_05_0002585_tree ,
OG_06_0002821 (SeedPlants) Phylogenetic Tree(s): OG_06_0002821_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00018p00131950
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT1G33120 No alias Ribosomal protein L6 family 0.16 Archaeplastida
AT1G33140 PGY2 Ribosomal protein L6 family 0.2 Archaeplastida
AT4G10450 No alias Ribosomal protein L6 family 0.1 Archaeplastida
Cpa|evm.model.tig00001532.12 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 Archaeplastida
Cre12.g494050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 Archaeplastida
GSVIVT01016795001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
GSVIVT01038670001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
LOC_Os02g01332.1 No alias component RPL9 of LSU proteome component 0.08 Archaeplastida
LOC_Os09g31180.1 No alias component RPL9 of LSU proteome component 0.22 Archaeplastida
MA_38141g0010 No alias component RPL9 of LSU proteome component 0.14 Archaeplastida
Mp4g24070.1 No alias component RPL9 of LSU proteome component 0.33 Archaeplastida
Pp3c10_8500V3.1 No alias Ribosomal protein L6 family 0.19 Archaeplastida
Pp3c14_8600V3.1 No alias Ribosomal protein L6 family 0.23 Archaeplastida
Pp3c16_20070V3.1 No alias Ribosomal protein L6 family 0.11 Archaeplastida
Pp3c27_8190V3.1 No alias Ribosomal protein L6 family 0.22 Archaeplastida
Smo269009 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Solyc06g073310.3.1 No alias component RPL9 of LSU proteome component 0.24 Archaeplastida
Solyc08g014550.3.1 No alias component RPL9 of LSU proteome component 0.19 Archaeplastida
Solyc12g096700.2.1 No alias component RPL9 of LSU proteome component 0.28 Archaeplastida
Zm00001e025404_P001 No alias component RPL9 of LSU proteome component 0.1 Archaeplastida
Zm00001e029810_P003 No alias component RPL9 of LSU proteome component 0.19 Archaeplastida
Zm00001e036699_P002 No alias component RPL9 of LSU proteome component 0.15 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016531 copper chaperone activity IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 12 86
IPR020040 Ribosomal_L6_a/b-dom 98 177
No external refs found!