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  5. Smo437527

Smo437527


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL10 component


Gene families : OG0002582 (Archaeplastida) Phylogenetic Tree(s): OG0002582_tree ,
OG_05_0002513 (LandPlants) Phylogenetic Tree(s): OG_05_0002513_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo437527
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00151750 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
AT1G14320 SAC52, RPL10, RPL10A Ribosomal protein L16p/L10e family protein 0.12 Archaeplastida
Cpa|evm.model.tig00001424.5 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
GSVIVT01001137001 No alias 60S ribosomal protein L10 OS=Vitis riparia 0.04 Archaeplastida
GSVIVT01024537001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
Gb_06067 No alias component RPL10 of LSU proteome component 0.06 Archaeplastida
LOC_Os11g11390.1 No alias component RPL10 of LSU proteome component 0.08 Archaeplastida
MA_17326g0010 No alias component RPL10 of LSU proteome component 0.1 Archaeplastida
Mp4g23990.1 No alias component RPL10 of LSU proteome component 0.12 Archaeplastida
Pp3c11_4130V3.1 No alias Ribosomal protein L16p/L10e family protein 0.07 Archaeplastida
Pp3c1_3170V3.1 No alias Ribosomal protein L16p/L10e family protein 0.07 Archaeplastida
Pp3c2_29600V3.1 No alias Ribosomal protein L16p/L10e family protein 0.11 Archaeplastida
Pp3c7_22400V3.1 No alias Ribosomal protein L16p/L10e family protein 0.07 Archaeplastida
Solyc06g007520.4.1 No alias component RPL10 of LSU proteome component 0.07 Archaeplastida
Solyc06g082650.4.1 No alias component RPL10 of LSU proteome component 0.07 Archaeplastida
Solyc06g082670.3.1 No alias component RPL10 of LSU proteome component 0.08 Archaeplastida
Zm00001e004933_P001 No alias component RPL10 of LSU proteome component 0.02 Archaeplastida
Zm00001e012474_P002 No alias component RPL10 of LSU proteome component 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 12 166
No external refs found!