- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : RNA biosynthesis.transcriptional activation.SBP transcription factor
Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0001192 (LandPlants) Phylogenetic Tree(s): OG_05_0001192_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo437670 | |
| Cluster | HCCA: Cluster_66 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GSVIVT01008556001 | No alias | RNA biosynthesis.transcriptional activation.SBP... | 0.03 | Archaeplastida | |
| LOC_Os03g61760.1 | No alias | transcription factor (SBP) | 0.02 | Archaeplastida | |
| MA_10435426g0010 | No alias | transcription factor (SBP) | 0.02 | Archaeplastida | |
| Pp3c14_18960V3.1 | No alias | squamosa promoter-binding protein-like 12 | 0.02 | Archaeplastida | |
| Pp3c25_8610V3.1 | No alias | squamosa promoter binding protein-like 8 | 0.02 | Archaeplastida | |
| Solyc01g068100.4.1 | No alias | Squamosa promoter-binding-like protein 1 OS=Arabidopsis... | 0.05 | Archaeplastida | |
| Zm00001e021425_P001 | No alias | transcription factor (SBP) | 0.03 | Archaeplastida | |
| Zm00001e034628_P001 | No alias | transcription factor (SBP) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004650 | polygalacturonase activity | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| MF | GO:0008987 | quinolinate synthetase A activity | IEP | Neighborhood |
| MF | GO:0016301 | kinase activity | IEP | Neighborhood |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Neighborhood |
| MF | GO:0016670 | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor | IEP | Neighborhood |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Neighborhood |
| MF | GO:0016972 | thiol oxidase activity | IEP | Neighborhood |
| CC | GO:0030119 | AP-type membrane coat adaptor complex | IEP | Neighborhood |
| MF | GO:0043531 | ADP binding | IEP | Neighborhood |
| CC | GO:0044599 | AP-5 adaptor complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004333 | SBP_dom | 74 | 147 |
| No external refs found! |