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  5. AMTR_s00019p00055750

AMTR_s00019p00055750 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.33

Description : Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase


Gene families : OG0000535 (Archaeplastida) Phylogenetic Tree(s): OG0000535_tree ,
OG_05_0000281 (LandPlants) Phylogenetic Tree(s): OG_05_0000281_tree ,
OG_06_0000124 (SeedPlants) Phylogenetic Tree(s): OG_06_0000124_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00055750
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01020794001 No alias Polygalacturonase OS=Nicotiana tabacum 0.03 Archaeplastida
LOC_Os06g40880.1 No alias Probable galacturan 1,4-alpha-galacturonidase SALK6... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006855 drug transmembrane transport IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0015238 drug transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
BP GO:0015893 drug transport IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 7 171
No external refs found!