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  5. Smo442428

Smo442428


Description : Cell cycle.regulation.cyclins.CYCA-type cyclin


Gene families : OG0000635 (Archaeplastida) Phylogenetic Tree(s): OG0000635_tree ,
OG_05_0000438 (LandPlants) Phylogenetic Tree(s): OG_05_0000438_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo442428
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272790 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.09 Archaeplastida
AMTR_s00048p00184670 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.04 Archaeplastida
AMTR_s00068p00198800 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.09 Archaeplastida
AT1G44110 CYCA1;1 Cyclin A1;1 0.07 Archaeplastida
AT5G43080 CYCA3;1 Cyclin A3;1 0.05 Archaeplastida
Cpa|evm.model.tig00000076.67 No alias Cyclin-A2-1 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
GSVIVT01008823001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.06 Archaeplastida
GSVIVT01009399001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.05 Archaeplastida
Gb_03779 No alias cyclin (CYCA) 0.07 Archaeplastida
Gb_07594 No alias cyclin (CYCA) 0.08 Archaeplastida
Gb_10619 No alias cyclin (CYCA) 0.08 Archaeplastida
Gb_21011 No alias cyclin (CYCA) 0.07 Archaeplastida
LOC_Os01g13260.1 No alias cyclin (CYCA) 0.04 Archaeplastida
LOC_Os03g41100.1 No alias cyclin (CYCA) 0.06 Archaeplastida
LOC_Os12g31810.1 No alias cyclin (CYCA) 0.06 Archaeplastida
LOC_Os12g39210.1 No alias cyclin (CYCA) 0.03 Archaeplastida
MA_103138g0010 No alias cyclin (CYCA) 0.06 Archaeplastida
MA_28323g0010 No alias cyclin (CYCA) 0.07 Archaeplastida
MA_6619g0010 No alias cyclin (CYCA) 0.05 Archaeplastida
MA_88982g0010 No alias cyclin (CYCA) 0.08 Archaeplastida
Mp2g25500.1 No alias cyclin (CYCA) 0.07 Archaeplastida
Pp3c1_38770V3.1 No alias Cyclin A1;1 0.02 Archaeplastida
Pp3c2_8700V3.1 No alias Cyclin A1;1 0.03 Archaeplastida
Pp3c2_8770V3.1 No alias Cyclin A1;1 0.03 Archaeplastida
Pp3c2_9020V3.1 No alias Cyclin A1;1 0.05 Archaeplastida
Solyc03g120440.3.1 No alias cyclin (CYCA) 0.05 Archaeplastida
Solyc04g078310.3.1 No alias cyclin (CYCA) 0.05 Archaeplastida
Solyc06g065680.3.1 No alias cyclin (CYCA) 0.02 Archaeplastida
Solyc11g005090.2.1 No alias cyclin (CYCA) 0.05 Archaeplastida
Solyc12g088470.3.1 No alias cyclin (CYCA) 0.05 Archaeplastida
Solyc12g088500.2.1 No alias cyclin (CYCA) 0.04 Archaeplastida
Solyc12g088520.2.1 No alias cyclin (CYCA) 0.03 Archaeplastida
Zm00001e005138_P001 No alias cyclin (CYCA) 0.02 Archaeplastida
Zm00001e013250_P002 No alias cyclin (CYCA) 0.04 Archaeplastida
Zm00001e017335_P001 No alias cyclin (CYCA) 0.05 Archaeplastida
Zm00001e026125_P002 No alias cyclin (CYCA) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 225 345
No external refs found!