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  4. Sequence
  5. Smo445658

Smo445658


Description : Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana


Gene families : OG0001141 (Archaeplastida) Phylogenetic Tree(s): OG0001141_tree ,
OG_05_0003821 (LandPlants) Phylogenetic Tree(s): OG_05_0003821_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo445658
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT2G17510 EMB2763 ribonuclease II family protein 0.02 Archaeplastida
Cpa|evm.model.tig00001067.25 No alias DIS3-like exonuclease 2 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre14.g613850 No alias Exosome complex exonuclease RRP44 homolog A... 0.01 Archaeplastida
GSVIVT01022300001 No alias RNA processing.RNA decay.exosome complex.associated... 0.07 Archaeplastida
Gb_36974 No alias DIS3-like exonuclease 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os02g51780.1 No alias DIS3-like exonuclease 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os03g03710.1 No alias exoribonuclease (Dis3/RRP44) 0.05 Archaeplastida
MA_207701g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_40294g0010 No alias DIS3-like exonuclease 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp3g18110.1 No alias Exosome complex exonuclease RRP44 homolog A... 0.03 Archaeplastida
Mp5g20950.1 No alias DIS3-like exonuclease 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp8g05460.1 No alias exoribonuclease (Dis3/RRP44) 0.02 Archaeplastida
Pp3c16_17530V3.1 No alias ribonuclease II family protein 0.02 Archaeplastida
Pp3c2_21290V3.1 No alias Ribonuclease II/R family protein 0.07 Archaeplastida
Solyc02g082460.3.1 No alias exoribonuclease (Dis3/RRP44) 0.07 Archaeplastida
Solyc11g013030.2.1 No alias DIS3-like exonuclease 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e000231_P001 No alias exoribonuclease (Dis3/RRP44) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!