Smo56793

Description : RNA biosynthesis.transcriptional activation.WRKY transcription factor

Gene families : OG0000007 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000250 (LandPlants) Phylogenetic Tree(s): OG_05_0000250_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo56793
Cluster	HCCA: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264880	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.WRKY...	0.02	Archaeplastida
AT2G30250	ATWRKY25, WRKY25	WRKY DNA-binding protein 25	0.03	Archaeplastida
AT4G18170	WRKY28, ATWRKY28	WRKY DNA-binding protein 28	0.02	Archaeplastida
AT4G23810	WRKY53, ATWRKY53	WRKY family transcription factor	0.02	Archaeplastida
AT5G56270	WRKY2, ATWRKY2	WRKY DNA-binding protein 2	0.01	Archaeplastida
Gb_26412	No alias	transcription factor (WRKY)	0.02	Archaeplastida
MA_10426648g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_11492g0010	No alias	transcription factor (WRKY)	0.02	Archaeplastida
MA_120969g0010	No alias	transcription factor (WRKY)	0.02	Archaeplastida
MA_16118g0010	No alias	transcription factor (WRKY). transcription factor (WRKY33)	0.02	Archaeplastida
MA_9394894g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp2g20960.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Mp6g16800.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Pp3c7_7550V3.1	No alias	WRKY DNA-binding protein 11	0.02	Archaeplastida
Pp3c8_4400V3.1	No alias	WRKY DNA-binding protein 2	0.02	Archaeplastida
Solyc02g088340.4.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc03g113120.4.1	No alias	transcription factor (WRKY)	0.01	Archaeplastida
Solyc04g078550.3.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Solyc06g008610.3.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Solyc06g066370.4.1	No alias	transcription factor (WRKY). transcription factor (WRKY33)	0.02	Archaeplastida
Solyc07g051840.4.1	No alias	transcription factor (WRKY)	0.01	Archaeplastida
Solyc08g006320.4.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Solyc08g008280.3.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc08g082110.4.1	No alias	No annotation	0.02	Archaeplastida
Solyc09g014990.4.1	No alias	transcription factor (WRKY). transcription factor (WRKY33)	0.03	Archaeplastida
Solyc10g011910.4.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	Neighborhood
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005216	ion channel activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0005991	trehalose metabolic process	IEP	Neighborhood
BP	GO:0005992	trehalose biosynthetic process	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022838	substrate-specific channel activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0046351	disaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	109	165

External Links

No external refs found!

Smo56793

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation