AMTR_s00019p00182190 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.192

Description : Solute transport.channels.GLR ligand-gated cation channel

Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0000261 (LandPlants) Phylogenetic Tree(s): OG_05_0000261_tree ,
OG_06_0000114 (SeedPlants) Phylogenetic Tree(s): OG_06_0000114_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00019p00182190
Cluster	HCCA: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00178690	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.04	Archaeplastida
AT2G24710	GLR2.3, ATGLR2.3	glutamate receptor 2.3	0.03	Archaeplastida
AT2G24720	GLR2.2, ATGLR2.2	glutamate receptor 2.2	0.04	Archaeplastida
AT2G29100	ATGLR2.9, GLR2.9	glutamate receptor 2.9	0.02	Archaeplastida
AT2G29120	GLR2.7, ATGLR2.7	glutamate receptor 2.7	0.04	Archaeplastida
AT3G04110	ATGLR1.1, GLR1.1, GLR1	glutamate receptor 1.1	0.02	Archaeplastida
AT5G11180	ATGLR2.6, GLR2.6	glutamate receptor 2.6	0.02	Archaeplastida
AT5G11210	GLR2.5, ATGLR2.5	glutamate receptor 2.5	0.03	Archaeplastida
AT5G27100	GLR2.1, ATGLR2.1	glutamate receptor 2.1	0.04	Archaeplastida
AT5G48400	ATGLR1.2, GLR1.2	Glutamate receptor family protein	0.03	Archaeplastida
AT5G48410	ATGLR1.3, GLR1.3	glutamate receptor 1.3	0.05	Archaeplastida
GSVIVT01014251001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
GSVIVT01033121001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
GSVIVT01033137001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.05	Archaeplastida
GSVIVT01033150001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
Gb_06329	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Gb_16131	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Gb_26917	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Gb_28362	No alias	ligand-gated cation channel (GLR)	0.08	Archaeplastida
LOC_Os02g54640.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
LOC_Os09g26144.1	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_101552g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_10427025g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_10430853g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_10434458g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_53385g0010	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
MA_88153g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Solyc02g077290.2.1	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Solyc04g078860.4.1	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Solyc06g063180.3.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Solyc06g063200.2.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Solyc07g052400.3.1	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Solyc08g006500.4.1	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Zm00001e007127_P002	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Zm00001e009847_P001	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Zm00001e016082_P001	No alias	ligand-gated cation channel (GLR)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0004888	transmembrane signaling receptor activity	None	Extended
MF	GO:0004970	ionotropic glutamate receptor activity	IEA	Interproscan
MF	GO:0005215	transporter activity	IEA	Interproscan
MF	GO:0005216	ion channel activity	None	Extended
MF	GO:0005230	extracellular ligand-gated ion channel activity	None	Extended
MF	GO:0005231	excitatory extracellular ligand-gated ion channel activity	None	Extended
MF	GO:0005234	extracellularly glutamate-gated ion channel activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	IEA	Interproscan
MF	GO:0008066	glutamate receptor activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022824	transmitter-gated ion channel activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022835	transmitter-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
CC	GO:0030288	outer membrane-bounded periplasmic space	IEA	Interproscan
MF	GO:0030594	neurotransmitter receptor activity	None	Extended
MF	GO:0038023	signaling receptor activity	None	Extended
CC	GO:0042597	periplasmic space	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003933	GTP cyclohydrolase activity	IEP	Neighborhood
MF	GO:0003935	GTP cyclohydrolase II activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006771	riboflavin metabolic process	IEP	Neighborhood
BP	GO:0008037	cell recognition	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
MF	GO:0008374	O-acyltransferase activity	IEP	Neighborhood
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009231	riboflavin biosynthetic process	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Neighborhood
MF	GO:0016851	magnesium chelatase activity	IEP	Neighborhood
MF	GO:0019238	cyclohydrolase activity	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
BP	GO:0048544	recognition of pollen	IEP	Neighborhood
MF	GO:0051002	ligase activity, forming nitrogen-metal bonds	IEP	Neighborhood
MF	GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001828	ANF_lig-bd_rcpt	4	310
IPR001320	Iontro_rcpt	500	752
IPR001638	Solute-binding_3/MltF_N	398	722

External Links

No external refs found!

AMTR_s00019p00182190 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation