1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. Smo66840

Smo66840


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS1 rRNA removal.BRX1 assembly factor


Gene families : OG0006008 (Archaeplastida) Phylogenetic Tree(s): OG0006008_tree ,
OG_05_0007164 (LandPlants) Phylogenetic Tree(s): OG_05_0007164_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo66840
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AT1G52930 No alias Ribosomal RNA processing Brix domain protein 0.07 Archaeplastida
AT3G15460 No alias Ribosomal RNA processing Brix domain protein 0.05 Archaeplastida
Cpa|evm.model.tig00001206.16 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Cre02.g095400 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 Archaeplastida
GSVIVT01028448001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Gb_30311 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.03 Archaeplastida
LOC_Os02g37870.1 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.02 Archaeplastida
Pp3c16_10600V3.1 No alias Ribosomal RNA processing Brix domain protein 0.02 Archaeplastida
Solyc04g016380.3.1 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.03 Archaeplastida
Zm00001e014980_P002 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.02 Archaeplastida
Zm00001e022842_P003 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0030008 TRAPP complex IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046834 lipid phosphorylation IEP Neighborhood
BP GO:0046854 phosphatidylinositol phosphorylation IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007109 Brix 41 229
No external refs found!