1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00019p00220720

AMTR_s00019p00220720 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00019.278

Description : Chromatin organisation.histones.H4-type histone


Gene families : OG0000170 (Archaeplastida) Phylogenetic Tree(s): OG0000170_tree ,
OG_05_0000135 (LandPlants) Phylogenetic Tree(s): OG_05_0000135_tree ,
OG_06_0000106 (SeedPlants) Phylogenetic Tree(s): OG_06_0000106_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00019p00220720
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
Cre06.g265050 No alias Chromatin organisation.histones.H4-type histone 0.04 Archaeplastida
Cre06.g265450 No alias Chromatin organisation.histones.H4-type histone 0.04 Archaeplastida
Cre06.g274150 No alias Chromatin organisation.histones.H4-type histone 0.03 Archaeplastida
Cre12.g504600 No alias Chromatin organisation.histones.H4-type histone 0.04 Archaeplastida
Cre12.g505450 No alias Chromatin organisation.histones.H4-type histone 0.04 Archaeplastida
Cre12.g506350 No alias Chromatin organisation.histones.H4-type histone 0.03 Archaeplastida
Cre12.g506450 No alias Chromatin organisation.histones.H4-type histone 0.04 Archaeplastida
Cre17.g709100 No alias Chromatin organisation.histones.H4-type histone 0.03 Archaeplastida
Gb_25031 No alias histone (H4) 0.03 Archaeplastida
MA_10433778g0010 No alias histone (H4) 0.03 Archaeplastida
MA_116904g0010 No alias histone (H4) 0.05 Archaeplastida
MA_234535g0010 No alias histone (H4) 0.03 Archaeplastida
MA_713159g0010 No alias histone (H4) 0.03 Archaeplastida
MA_89764g0010 No alias histone (H4) 0.03 Archaeplastida
MA_97185g0020 No alias histone (H4) 0.03 Archaeplastida
Mp5g16840.1 No alias histone (H4) 0.03 Archaeplastida
Solyc06g005420.1.1 No alias histone (H4) 0.03 Archaeplastida
Solyc11g066160.1.1 No alias histone (H4) 0.04 Archaeplastida
Zm00001e009859_P001 No alias histone (H4) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 28 94
No external refs found!