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Description : Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo79052 | |
| Cluster | HCCA: Cluster_104 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00002p00270380 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.02 | Archaeplastida | |
| AMTR_s00044p00169670 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g17210... | 0.02 | Archaeplastida | |
| AMTR_s00170p00032020 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g16860... | 0.02 | Archaeplastida | |
| AMTR_s00173p00057570 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g33170... | 0.02 | Archaeplastida | |
| AMTR_s00439p00010860 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g34400... | 0.01 | Archaeplastida | |
| Gb_33061 | No alias | RNA editing factor (MEF3) | 0.02 | Archaeplastida | |
| Gb_34736 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Archaeplastida | |
| Gb_36168 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.02 | Archaeplastida | |
| LOC_Os02g53050.1 | No alias | RNA editing factor (CLB19) | 0.03 | Archaeplastida | |
| MA_10429371g0010 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | Archaeplastida | |
| MA_10433543g0010 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.04 | Archaeplastida | |
| MA_104937g0010 | No alias | Pentatricopeptide repeat-containing protein At2g03880,... | 0.01 | Archaeplastida | |
| MA_124907g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.02 | Archaeplastida | |
| MA_39263g0010 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.02 | Archaeplastida | |
| MA_52613g0020 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.01 | Archaeplastida | |
| MA_70677g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_835083g0010 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
| MA_9384g0020 | No alias | Pentatricopeptide repeat-containing protein At3g49170,... | 0.01 | Archaeplastida | |
| Smo121365 | No alias | Pentatricopeptide repeat-containing protein At3g02330,... | 0.03 | Archaeplastida | |
| Smo134581 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.04 | Archaeplastida | |
| Smo80739 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
| Smo84768 | No alias | Pentatricopeptide repeat-containing protein At4g21065... | 0.03 | Archaeplastida | |
| Solyc03g120460.4.1 | No alias | No annotation | 0.02 | Archaeplastida | |
| Solyc04g005770.3.1 | No alias | Pentatricopeptide repeat-containing protein At2g02750... | 0.02 | Archaeplastida | |
| Solyc11g006700.1.1 | No alias | Pentatricopeptide repeat-containing protein At5g04780,... | 0.02 | Archaeplastida | |
| Zm00001e016923_P001 | No alias | Pentatricopeptide repeat-containing protein At3g46790,... | 0.03 | Archaeplastida | |
| Zm00001e022858_P001 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
| BP | GO:0005984 | disaccharide metabolic process | IEP | Neighborhood |
| BP | GO:0005991 | trehalose metabolic process | IEP | Neighborhood |
| BP | GO:0005992 | trehalose biosynthetic process | IEP | Neighborhood |
| BP | GO:0006813 | potassium ion transport | IEP | Neighborhood |
| BP | GO:0009311 | oligosaccharide metabolic process | IEP | Neighborhood |
| BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | Neighborhood |
| BP | GO:0009439 | cyanate metabolic process | IEP | Neighborhood |
| BP | GO:0046351 | disaccharide biosynthetic process | IEP | Neighborhood |
| BP | GO:0071804 | cellular potassium ion transport | IEP | Neighborhood |
| BP | GO:0071805 | potassium ion transmembrane transport | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 13 | 41 |
| No external refs found! |