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  5. Smo93613

Smo93613


Description : Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana


Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo93613
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
AMTR_s00040p00104050 evm_27.TU.AmTr_v1... Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris 0.03 Archaeplastida
AMTR_s00095p00146440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.04 Archaeplastida
AT2G47110 UBQ6 ubiquitin 6 0.04 Archaeplastida
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.04 Archaeplastida
AT3G62250 UBQ5 ubiquitin 5 0.04 Archaeplastida
Cpa|evm.model.tig00022075.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 Archaeplastida
Cre06.g273600 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
GSVIVT01028198001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01038617001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
Gb_15027 No alias component RPS27a of SSU proteome 0.05 Archaeplastida
Gb_40288 No alias component RPS27a of SSU proteome 0.04 Archaeplastida
Gb_41257 No alias component RPL40 of LSU proteome component 0.04 Archaeplastida
LOC_Os06g44080.1 No alias ubiquitin-fold protein (RUB) 0.02 Archaeplastida
LOC_Os09g31019.1 No alias component RPL40 of LSU proteome component 0.03 Archaeplastida
LOC_Os09g39500.1 No alias component RPL40 of LSU proteome component 0.02 Archaeplastida
MA_13101g0020 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
MA_529552g0010 No alias component RPS27a of SSU proteome 0.03 Archaeplastida
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.04 Archaeplastida
Pp3c10_25270V3.1 No alias ubiquitin extension protein 1 0.02 Archaeplastida
Pp3c12_5640V3.1 No alias ubiquitin 6 0.03 Archaeplastida
Pp3c12_5760V3.1 No alias ubiquitin 6 0.03 Archaeplastida
Pp3c20_23170V3.1 No alias ubiquitin extension protein 1 0.05 Archaeplastida
Pp3c22_21900V3.1 No alias polyubiquitin 10 0.02 Archaeplastida
Pp3c24_430V3.1 No alias ubiquitin extension protein 1 0.04 Archaeplastida
Pp3c3_25480V3.1 No alias ubiquitin extension protein 1 0.04 Archaeplastida
Pp3c4_11930V3.1 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.05 Archaeplastida
Pp3c4_19000V3.1 No alias ubiquitin 6 0.04 Archaeplastida
Pp3c8_14230V3.1 No alias ubiquitin 6 0.05 Archaeplastida
Solyc01g068045.1.1 No alias component RPS27a of SSU proteome 0.02 Archaeplastida
Solyc01g096290.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc03g082570.4.1 No alias component RPL40 of LSU proteome component 0.02 Archaeplastida
Solyc12g098940.2.1 No alias component RPS27a of SSU proteome 0.03 Archaeplastida
Solyc12g099025.1.1 No alias component RPS27a of SSU proteome 0.03 Archaeplastida
Zm00001e000965_P001 No alias component RPL40 of LSU proteome component 0.01 Archaeplastida
Zm00001e026237_P001 No alias component RPS27a of SSU proteome 0.02 Archaeplastida
Zm00001e028916_P001 No alias component RPS27a of SSU proteome 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
CC GO:0005811 lipid droplet IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
CC GO:0012511 monolayer-surrounded lipid storage body IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022617 Rad60/SUMO-like_dom 15 98
No external refs found!