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  5. Smo96251

Smo96251


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL17 component


Gene families : OG0001876 (Archaeplastida) Phylogenetic Tree(s): OG0001876_tree ,
OG_05_0001644 (LandPlants) Phylogenetic Tree(s): OG_05_0001644_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo96251
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00159640 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
AMTR_s00013p00211990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 Archaeplastida
AMTR_s00013p00223470 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
AMTR_s00013p00224030 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
AT1G27400 No alias Ribosomal protein L22p/L17e family protein 0.13 Archaeplastida
AT1G67430 No alias Ribosomal protein L22p/L17e family protein 0.18 Archaeplastida
Cpa|evm.model.tig00001215.8 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Cre13.g568900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
GSVIVT01008528001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
GSVIVT01010449001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
GSVIVT01010450001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 Archaeplastida
LOC_Os08g41810.1 No alias component RPL17 of LSU proteome component 0.14 Archaeplastida
LOC_Os09g08430.1 No alias component RPL17 of LSU proteome component 0.09 Archaeplastida
MA_10430182g0010 No alias component RPL17 of LSU proteome component 0.1 Archaeplastida
MA_64923g0010 No alias component RPL17 of LSU proteome component 0.15 Archaeplastida
Mp1g10230.1 No alias component RPL17 of LSU proteome component 0.21 Archaeplastida
Pp3c11_5840V3.1 No alias Ribosomal protein L22p/L17e family protein 0.18 Archaeplastida
Pp3c1_6650V3.1 No alias Ribosomal protein L22p/L17e family protein 0.13 Archaeplastida
Pp3c2_29840V3.1 No alias Ribosomal protein L22p/L17e family protein 0.19 Archaeplastida
Pp3c7_25220V3.1 No alias Ribosomal protein L22p/L17e family protein 0.08 Archaeplastida
Pp3c7_25240V3.1 No alias Ribosomal protein L22p/L17e family protein 0.21 Archaeplastida
Solyc03g111230.4.1 No alias component RPL17 of LSU proteome component 0.04 Archaeplastida
Solyc06g071870.3.1 No alias component RPL17 of LSU proteome component 0.11 Archaeplastida
Solyc06g071880.4.1 No alias component RPL17 of LSU proteome component 0.09 Archaeplastida
Zm00001e003661_P001 No alias component RPL17 of LSU proteome component 0.14 Archaeplastida
Zm00001e021953_P003 No alias component RPL17 of LSU proteome component 0.09 Archaeplastida
Zm00001e026882_P002 No alias component RPL17 of LSU proteome component 0.06 Archaeplastida
Zm00001e031261_P001 No alias component RPL17 of LSU proteome component 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001063 Ribosomal_L22 17 152
No external refs found!