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  5. AMTR_s00020p00230290

AMTR_s00020p00230290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00020.101

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase-activating protein (RAB-GAP)


Gene families : OG0003205 (Archaeplastida) Phylogenetic Tree(s): OG0003205_tree ,
OG_05_0002803 (LandPlants) Phylogenetic Tree(s): OG_05_0002803_tree ,
OG_06_0003448 (SeedPlants) Phylogenetic Tree(s): OG_06_0003448_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00020p00230290
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
LOC_Os04g30880.1 No alias RAB-GTPase-activating protein (RAB-GAP) 0.02 Archaeplastida
Mp3g18340.1 No alias RAB-GTPase-activating protein (RAB-GAP) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
MF GO:0008474 palmitoyl-(protein) hydrolase activity IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010038 response to metal ion IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
MF GO:0098599 palmitoyl hydrolase activity IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
InterPro domains Description Start Stop
IPR000195 Rab-GTPase-TBC_dom 231 424
No external refs found!