Solyc00g500047.1.1

Description : 50S ribosomal protein L2, chloroplastic OS=Solanum lycopersicum (sp|q2mi59|rk2_sollc : 468.0)

Gene families : OG0000693 (Archaeplastida) Phylogenetic Tree(s): OG0000693_tree ,
OG_05_0000458 (LandPlants) Phylogenetic Tree(s): OG_05_0000458_tree ,
OG_06_0000259 (SeedPlants) Phylogenetic Tree(s): OG_06_0000259_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc00g500047.1.1
Cluster	HCCA: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
ATCG00830	RPL2.1	ribosomal protein L2	0.06	Archaeplastida
ATCG01310	RPL2.2	ribosomal protein L2	0.06	Archaeplastida
Gb_17475	No alias	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.05	Archaeplastida
Gb_24024	No alias	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.05	Archaeplastida
Gb_25047	No alias	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.05	Archaeplastida
Gb_37512	No alias	50S ribosomal protein L2, chloroplastic OS=Cycas...	0.03	Archaeplastida
Mp1g19370.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc00g500150.1.1	No alias	50S ribosomal protein L2, chloroplastic OS=Nicotiana...	0.05	Archaeplastida
Solyc05g023730.1.1	No alias	50S ribosomal protein L2, chloroplastic OS=Nicotiana...	0.14	Archaeplastida
Solyc10g018610.2.1	No alias	No annotation	0.05	Archaeplastida
Zm00001e001581_P001	No alias	No annotation	0.03	Archaeplastida
Zm00001e015952_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e042046_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e042062_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e042089_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
BP	GO:0046034	ATP metabolic process	IEP	Neighborhood
BP	GO:1902600	proton transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR022669	Ribosomal_L2_C	152	269
IPR022666	Rbsml_prot_L2_RNA-bd_dom	40	116

External Links

No external refs found!

Solyc00g500047.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation