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  5. Solyc00g500212.1.1

Solyc00g500212.1.1


Description : component psRPS4 of small ribosomal subunit proteome


Gene families : OG0003680 (Archaeplastida) Phylogenetic Tree(s): OG0003680_tree ,
OG_05_0003482 (LandPlants) Phylogenetic Tree(s): OG_05_0003482_tree ,
OG_06_0002285 (SeedPlants) Phylogenetic Tree(s): OG_06_0002285_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500212.1.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
ATCG00380 RPS4 chloroplast ribosomal protein S4 0.13 Archaeplastida
Gb_06832 No alias component psRPS4 of small ribosomal subunit proteome 0.02 Archaeplastida
LOC_Os04g16738.1 No alias component psRPS4 of small ribosomal subunit proteome 0.14 Archaeplastida
LOC_Os04g16764.1 No alias component psRPS4 of small ribosomal subunit proteome 0.14 Archaeplastida
LOC_Os10g38214.1 No alias component psRPS4 of small ribosomal subunit proteome 0.14 Archaeplastida
Solyc00g500060.1.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc09g015310.3.1 No alias component psRPS4 of small ribosomal subunit proteome 0.04 Archaeplastida
Zm00001e003895_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida
Zm00001e003897_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.03 Archaeplastida
Zm00001e003908_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida
Zm00001e013560_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida
Zm00001e042033_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida
Zm00001e042054_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida
Zm00001e042078_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida
Zm00001e042098_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida
Zm00001e042236_P001 No alias No annotation 0.02 Archaeplastida
Zm00001e042353_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009539 photosystem II reaction center IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010109 regulation of photosynthesis IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0031647 regulation of protein stability IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0042301 phosphate ion binding IEP Neighborhood
BP GO:0042548 regulation of photosynthesis, light reaction IEP Neighborhood
BP GO:0042549 photosystem II stabilization IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0050821 protein stabilization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 89 136
IPR001912 Ribosomal_S4/S9_N 3 88
No external refs found!