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  5. Solyc00g500297.1.1

Solyc00g500297.1.1


Description : 50S ribosomal protein L2, chloroplastic OS=Nicotiana sylvestris (sp|q3c1n6|rk2_nicsy : 231.0)


Gene families : OG0000693 (Archaeplastida) Phylogenetic Tree(s): OG0000693_tree ,
OG_05_0000458 (LandPlants) Phylogenetic Tree(s): OG_05_0000458_tree ,
OG_06_0000259 (SeedPlants) Phylogenetic Tree(s): OG_06_0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500297.1.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
ATCG00830 RPL2.1 ribosomal protein L2 0.1 Archaeplastida
ATCG01310 RPL2.2 ribosomal protein L2 0.1 Archaeplastida
Gb_17475 No alias 50S ribosomal protein L2, chloroplastic OS=Cycas... 0.04 Archaeplastida
Gb_24024 No alias 50S ribosomal protein L2, chloroplastic OS=Cycas... 0.05 Archaeplastida
Gb_25047 No alias 50S ribosomal protein L2, chloroplastic OS=Cycas... 0.05 Archaeplastida
Gb_37512 No alias 50S ribosomal protein L2, chloroplastic OS=Cycas... 0.03 Archaeplastida
Mp1g19370.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Smo137825 No alias Protein biosynthesis.organelle translation... 0.03 Archaeplastida
Solyc00g500150.1.1 No alias 50S ribosomal protein L2, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Solyc00g500152.1.1 No alias 50S ribosomal protein L2, chloroplastic OS=Nicotiana... 0.08 Archaeplastida
Solyc05g023730.1.1 No alias 50S ribosomal protein L2, chloroplastic OS=Nicotiana... 0.12 Archaeplastida
Solyc10g018610.2.1 No alias No annotation 0.09 Archaeplastida
Zm00001e001581_P001 No alias No annotation 0.03 Archaeplastida
Zm00001e015952_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e042046_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e042062_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e042089_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Neighborhood
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 1 117
No external refs found!