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  5. Solyc00g500336.1.1

Solyc00g500336.1.1


Description : Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana (sp|q94hw2|polr1_arath : 82.4)


Gene families : OG0000375 (Archaeplastida) Phylogenetic Tree(s): OG0000375_tree ,
OG_05_0000187 (LandPlants) Phylogenetic Tree(s): OG_05_0000187_tree ,
OG_06_0000080 (SeedPlants) Phylogenetic Tree(s): OG_06_0000080_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g500336.1.1
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
Solyc01g058007.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc01g105763.1.1 No alias No annotation 0.17 Archaeplastida
Solyc04g150120.1.1 No alias No annotation 0.01 Archaeplastida
Solyc05g010755.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc05g048755.1.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Solyc06g005525.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc06g009785.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.14 Archaeplastida
Solyc06g009975.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc06g031714.1.1 No alias No annotation 0.08 Archaeplastida
Solyc06g060623.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.03 Archaeplastida
Solyc06g060627.1.1 No alias no hits & (original description: none) 0.11 Archaeplastida
Solyc06g061225.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.14 Archaeplastida
Solyc06g150114.1.1 No alias No annotation 0.04 Archaeplastida
Solyc07g020925.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc08g062655.1.1 No alias No annotation 0.07 Archaeplastida
Solyc08g065675.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Solyc09g011695.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.06 Archaeplastida
Solyc09g014935.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida
Solyc09g018595.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Solyc09g031513.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc09g065525.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.17 Archaeplastida
Solyc10g049945.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc10g051035.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Solyc10g075177.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc11g040227.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida
Solyc12g045033.1.1 No alias no hits & (original description: none) 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!