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  5. Solyc01g010240.3.1

Solyc01g010240.3.1


Description : transcription factor (YABBY)


Gene families : OG0000890 (Archaeplastida) Phylogenetic Tree(s): OG0000890_tree ,
OG_05_0010937 (LandPlants) Phylogenetic Tree(s): OG_05_0010937_tree ,
OG_06_0010891 (SeedPlants) Phylogenetic Tree(s): OG_06_0010891_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g010240.3.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00199030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
AMTR_s00085p00032940 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.06 Archaeplastida
AT1G23420 INO Plant-specific transcription factor YABBY family protein 0.1 Archaeplastida
AT2G45190 AFO, YAB1, FIL Plant-specific transcription factor YABBY family protein 0.05 Archaeplastida
GSVIVT01012246001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.08 Archaeplastida
Gb_22423 No alias transcription factor (YABBY) 0.03 Archaeplastida
LOC_Os02g42950.1 No alias transcription factor (YABBY) 0.03 Archaeplastida
LOC_Os04g45330.1 No alias transcription factor (YABBY) 0.04 Archaeplastida
LOC_Os07g06620.2 No alias transcription factor (YABBY) 0.03 Archaeplastida
LOC_Os10g36420.1 No alias transcription factor (YABBY) 0.05 Archaeplastida
LOC_Os12g42610.1 No alias transcription factor (YABBY) 0.03 Archaeplastida
MA_10432332g0010 No alias transcription factor (YABBY) 0.03 Archaeplastida
MA_407206g0010 No alias transcription factor (YABBY) 0.04 Archaeplastida
Solyc06g073920.3.1 No alias transcription factor (YABBY) 0.04 Archaeplastida
Solyc08g079100.3.1 No alias transcription factor (YABBY) 0.04 Archaeplastida
Solyc11g071810.2.1 No alias transcription factor (YABBY) 0.05 Archaeplastida
Zm00001e000845_P005 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e004396_P001 No alias transcription factor (YABBY) 0.04 Archaeplastida
Zm00001e007412_P003 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e012387_P001 No alias transcription factor (YABBY) 0.07 Archaeplastida
Zm00001e012388_P001 No alias transcription factor (YABBY) 0.04 Archaeplastida
Zm00001e012577_P001 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e032845_P002 No alias transcription factor (YABBY) 0.04 Archaeplastida
Zm00001e038717_P002 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e041322_P001 No alias transcription factor (YABBY) 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0007275 multicellular organism development IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006780 YABBY 26 157
No external refs found!