Solyc01g010600.4.1

Description : transcription factor (HD-ZIP I/II)

Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g010600.4.1
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00215130	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
AT1G26960	AtHB23, HB23	homeobox protein 23	0.02	Archaeplastida
AT1G27045	No alias	Homeobox-leucine zipper protein family	0.04	Archaeplastida
AT1G69780	ATHB13	Homeobox-leucine zipper protein family	0.03	Archaeplastida
AT2G46680	HB-7, ATHB-7, ATHB7	homeobox 7	0.04	Archaeplastida
AT3G01220	ATHB20, HB20	homeobox protein 20	0.06	Archaeplastida
AT5G15150	ATHB3, HB-3, ATHB-3, HAT7	homeobox 3	0.04	Archaeplastida
AT5G53980	ATHB52, HB52	homeobox protein 52	0.04	Archaeplastida
GSVIVT01019012001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01020033001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
Gb_04698	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Gb_35959	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
LOC_Os03g07450.1	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
LOC_Os03g08960.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os03g10210.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os07g39320.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
LOC_Os08g32080.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os08g32085.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os09g21180.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
LOC_Os09g35910.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os10g23090.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
LOC_Os10g26500.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
MA_10428916g0010	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
MA_130615g0020	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
MA_19453g0050	No alias	Homeobox-leucine zipper protein HAT5 OS=Arabidopsis...	0.03	Archaeplastida
MA_60543g0010	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Pp3c11_23440V3.1	No alias	homeobox 1	0.04	Archaeplastida
Pp3c12_21760V3.1	No alias	homeobox protein 16	0.02	Archaeplastida
Pp3c17_18190V3.1	No alias	homeobox protein 16	0.05	Archaeplastida
Pp3c1_36940V3.1	No alias	homeobox protein 16	0.03	Archaeplastida
Pp3c1_37070V3.1	No alias	homeobox protein 16	0.06	Archaeplastida
Pp3c5_27150V3.1	No alias	homeobox protein 16	0.02	Archaeplastida
Pp3c6_2730V3.1	No alias	Homeobox-leucine zipper protein family	0.03	Archaeplastida
Pp3c7_2100V3.1	No alias	Homeobox-leucine zipper protein family	0.04	Archaeplastida
Pp3c8_440V3.1	No alias	homeobox 3	0.02	Archaeplastida
Smo18217	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
Solyc02g067410.2.1	No alias	transcription factor (HD-ZIP I/II)	0.07	Archaeplastida
Solyc02g087840.3.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Solyc03g034130.4.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc04g074700.4.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Solyc05g051460.3.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc06g053220.3.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Solyc07g062790.1.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc09g008810.3.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Zm00001e000532_P002	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e000659_P001	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e010218_P001	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e034785_P001	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Zm00001e038833_P001	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e038901_P001	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	Neighborhood
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0004857	enzyme inhibitor activity	IEP	Neighborhood
MF	GO:0004860	protein kinase inhibitor activity	IEP	Neighborhood
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006749	glutathione metabolic process	IEP	Neighborhood
BP	GO:0006751	glutathione catabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0007050	cell cycle arrest	IEP	Neighborhood
MF	GO:0008131	primary amine oxidase activity	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0009894	regulation of catabolic process	IEP	Neighborhood
BP	GO:0010274	hydrotropism	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016842	amidine-lyase activity	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
MF	GO:0019210	kinase inhibitor activity	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
BP	GO:0042176	regulation of protein catabolic process	IEP	Neighborhood
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Neighborhood
BP	GO:0043171	peptide catabolic process	IEP	Neighborhood
BP	GO:0044273	sulfur compound catabolic process	IEP	Neighborhood
BP	GO:0045786	negative regulation of cell cycle	IEP	Neighborhood
BP	GO:0048523	negative regulation of cellular process	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051187	cofactor catabolic process	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Neighborhood
CC	GO:1905368	peptidase complex	IEP	Neighborhood
CC	GO:1905369	endopeptidase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	76	127
IPR003106	Leu_zip_homeo	129	168

External Links

No external refs found!

Solyc01g010600.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation