Solyc01g013920.1.1

Description : Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana (sp|q3ebc8|dcl2_arath : 130.0)

Gene families : OG0006875 (Archaeplastida) Phylogenetic Tree(s): OG0006875_tree ,
OG_05_0009897 (LandPlants) Phylogenetic Tree(s): OG_05_0009897_tree ,
OG_06_0008114 (SeedPlants) Phylogenetic Tree(s): OG_06_0008114_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g013920.1.1
Cluster	HCCA: Cluster_172

Target	Alias	Description	ECC score	Gene Family Method
Solyc01g012670.3.1	No alias	Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Solyc01g013910.1.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc01g014420.1.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc01g014440.2.1	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0009521	photosystem	IEP	Neighborhood
BP	GO:0009767	photosynthetic electron transport chain	IEP	Neighborhood
MF	GO:0016168	chlorophyll binding	IEP	Neighborhood
BP	GO:0019684	photosynthesis, light reaction	IEP	Neighborhood
BP	GO:0022900	electron transport chain	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000999	RNase_III_dom	10	73

External Links

No external refs found!

Solyc01g013920.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation