- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana (sp|f4jkk0|sud1_arath : 112.0)
Gene families : OG0000436 (Archaeplastida) Phylogenetic Tree(s): OG0000436_tree ,
OG_05_0022080 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0021476 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc01g020190.2.1 | |
| Cluster | HCCA: Cluster_214 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G62460 | No alias | RING/FYVE/PHD zinc finger superfamily protein | 0.03 | Archaeplastida | |
| GSVIVT01028110001 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.04 | Archaeplastida | |
| Gb_37740 | No alias | RING-v-class E3 ligase | 0.02 | Archaeplastida | |
| LOC_Os11g38800.1 | No alias | RING-v-class E3 ligase | 0.01 | Archaeplastida | |
| Smo420592 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.01 | Archaeplastida | |
| Solyc01g079530.4.1 | No alias | RING-v-class E3 ligase | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Neighborhood |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006629 | lipid metabolic process | IEP | Neighborhood |
| MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | Neighborhood |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| MF | GO:0016757 | transferase activity, transferring glycosyl groups | IEP | Neighborhood |
| MF | GO:0016758 | transferase activity, transferring hexosyl groups | IEP | Neighborhood |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0030258 | lipid modification | IEP | Neighborhood |
| BP | GO:0030259 | lipid glycosylation | IEP | Neighborhood |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | Neighborhood |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0070085 | glycosylation | IEP | Neighborhood |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
| MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR011016 | Znf_RING-CH | 70 | 115 |
| No external refs found! |