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  5. Solyc01g057760.4.1

Solyc01g057760.4.1


Description : DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana (sp|q9sqv1|rh40_arath : 729.0)


Gene families : OG0000695 (Archaeplastida) Phylogenetic Tree(s): OG0000695_tree ,
OG_05_0001582 (LandPlants) Phylogenetic Tree(s): OG_05_0001582_tree ,
OG_06_0084855 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g057760.4.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00263980 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
AMTR_s00096p00079870 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT3G06480 No alias DEAD box RNA helicase family protein 0.06 Archaeplastida
Cre12.g540200 No alias DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa... 0.01 Archaeplastida
GSVIVT01017651001 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_10302 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os01g10050.2 No alias pre-mRNA splicing regulator (DDX5) 0.02 Archaeplastida
LOC_Os01g36860.1 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.07 Archaeplastida
LOC_Os11g46240.1 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.05 Archaeplastida
MA_10432707g0010 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis... 0.03 Archaeplastida
MA_19015g0010 No alias pre-mRNA splicing regulator (DDX5) 0.04 Archaeplastida
MA_881548g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c1_24700V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.03 Archaeplastida
Pp3c7_8530V3.1 No alias DEAD box RNA helicase 1 0.02 Archaeplastida
Solyc02g086660.4.1 No alias ATP-dependent RNA helicase-like protein DB10... 0.02 Archaeplastida
Zm00001e011376_P001 No alias ATP-dependent RNA helicase-like protein DB10... 0.09 Archaeplastida
Zm00001e016546_P001 No alias pre-mRNA splicing regulator (DDX5) 0.04 Archaeplastida
Zm00001e018885_P005 No alias pre-mRNA splicing regulator (DDX5) 0.03 Archaeplastida
Zm00001e020727_P006 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.06 Archaeplastida
Zm00001e020972_P005 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.08 Archaeplastida
Zm00001e027719_P003 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 805 913
IPR011545 DEAD/DEAH_box_helicase_dom 598 768
No external refs found!