AMTR_s00021p00220150 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.206

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS6 component

Gene families : OG0006609 (Archaeplastida) Phylogenetic Tree(s): OG0006609_tree ,
OG_05_0005797 (LandPlants) Phylogenetic Tree(s): OG_05_0005797_tree ,
OG_06_0008190 (SeedPlants) Phylogenetic Tree(s): OG_06_0008190_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00021p00220150
Cluster	HCCA: Cluster_239

Target	Alias	Description	ECC score	Gene Family Method
AT1G64510	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.08	Archaeplastida
Cre12.g520600	No alias	Protein biosynthesis.organelle translation...	0.08	Archaeplastida
GSVIVT01019593001	No alias	Protein biosynthesis.organelle translation...	0.1	Archaeplastida
Gb_07402	No alias	component psRPS6 of small ribosomal subunit proteome	0.03	Archaeplastida
Gb_07403	No alias	component psRPS6 of small ribosomal subunit proteome	0.09	Archaeplastida
LOC_Os03g62630.1	No alias	component psRPS6 of small ribosomal subunit proteome	0.07	Archaeplastida
MA_10429326g0010	No alias	component psRPS6 of small ribosomal subunit proteome	0.08	Archaeplastida
Mp4g07210.1	No alias	component psRPS6 of small ribosomal subunit proteome	0.1	Archaeplastida
Pp3c15_17560V3.1	No alias	Translation elongation factor EF1B/ribosomal protein S6...	0.07	Archaeplastida
Smo58368	No alias	Protein biosynthesis.organelle translation...	0.04	Archaeplastida
Solyc08g082690.2.1	No alias	component psRPS6 of small ribosomal subunit proteome	0.07	Archaeplastida
Zm00001e006321_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009523	photosystem II	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
MF	GO:0016831	carboxy-lyase activity	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000529	Ribosomal_S6	101	200

External Links

No external refs found!

AMTR_s00021p00220150 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation