Solyc01g067390.4.1

Description : chromatin remodeling factor (Iswi)

Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0003200 (LandPlants) Phylogenetic Tree(s): OG_05_0003200_tree ,
OG_06_0004460 (SeedPlants) Phylogenetic Tree(s): OG_06_0004460_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g067390.4.1
Cluster	HCCA: Cluster_131

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00053p00098350	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
AMTR_s00071p00058700	evm_27.TU.AmTr_v1...	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Archaeplastida
AMTR_s00086p00165640	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.06	Archaeplastida
AMTR_s00148p00090060	evm_27.TU.AmTr_v1...	Helicase protein MOM1 OS=Arabidopsis thaliana	0.05	Archaeplastida
AT2G13370	CHR5	chromatin remodeling 5	0.04	Archaeplastida
AT2G25170	PKL, GYM, CHR6,...	chromatin remodeling factor CHD3 (PICKLE)	0.05	Archaeplastida
AT3G06010	ATCHR12	Homeotic gene regulator	0.07	Archaeplastida
AT3G06400	CHR11	chromatin-remodeling protein 11	0.03	Archaeplastida
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.05	Archaeplastida
Cpa\|evm.model.tig00000350.9	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.04	Archaeplastida
Cpa\|evm.model.tig00000983.26	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
Cpa\|evm.model.tig00020960.24	No alias	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.03	Archaeplastida
Cre07.g325700	No alias	ATP-dependent helicase BRM OS=Arabidopsis thaliana	0.03	Archaeplastida
Cre08.g377200	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.06	Archaeplastida
Cre09.g390000	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.01	Archaeplastida
Cre12.g537671	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cre16.g647602	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01012117001	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.06	Archaeplastida
GSVIVT01017791001	No alias	Chromatin organisation.chromatin remodeling...	0.13	Archaeplastida
GSVIVT01017821001	No alias	No description available	0.05	Archaeplastida
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
GSVIVT01026952001	No alias	Chromatin organisation.chromatin remodeling...	0.05	Archaeplastida
GSVIVT01035901001	No alias	Chromatin organisation.chromatin remodeling...	0.05	Archaeplastida
GSVIVT01037235001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.03	Archaeplastida
Gb_18673	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Archaeplastida
Gb_27153	No alias	chromatin remodeling factor (Snf2)	0.05	Archaeplastida
Gb_39649	No alias	chromatin remodeling factor (Iswi)	0.06	Archaeplastida
LOC_Os01g27040.1	No alias	chromatin remodeling factor (Iswi)	0.02	Archaeplastida
LOC_Os05g05230.1	No alias	chromatin remodeling factor (Snf2)	0.06	Archaeplastida
LOC_Os06g01320.1	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.02	Archaeplastida
LOC_Os06g08480.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.05	Archaeplastida
LOC_Os07g31450.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.05	Archaeplastida
MA_102992g0010	No alias	Probable chromatin-remodeling complex ATPase chain...	0.02	Archaeplastida
MA_10427682g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_137856g0010	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Mp1g17010.1	No alias	chromatin remodeling factor (Snf2)	0.06	Archaeplastida
Mp3g15030.1	No alias	chromatin remodeling factor (Iswi)	0.05	Archaeplastida
Mp5g24460.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.08	Archaeplastida
Mp8g17660.1	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Pp3c11_18940V3.1	No alias	chromatin-remodeling protein 11	0.05	Archaeplastida
Pp3c13_14440V3.1	No alias	transcription regulatory protein SNF2, putative	0.06	Archaeplastida
Pp3c13_19680V3.1	No alias	chromatin remodeling 4	0.04	Archaeplastida
Pp3c14_90V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.05	Archaeplastida
Pp3c18_19040V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.04	Archaeplastida
Pp3c18_19045V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Archaeplastida
Pp3c21_10800V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.05	Archaeplastida
Pp3c27_3890V3.1	No alias	Homeotic gene regulator	0.02	Archaeplastida
Pp3c5_19940V3.1	No alias	chromatin remodeling 5	0.04	Archaeplastida
Pp3c6_10390V3.1	No alias	chromatin remodeling 5	0.03	Archaeplastida
Smo102849	No alias	Chromatin organisation.chromatin remodeling...	0.06	Archaeplastida
Smo155996	No alias	Chromatin organisation.chromatin remodeling...	0.06	Archaeplastida
Smo177985	No alias	Chromatin organisation.chromatin remodeling...	0.06	Archaeplastida
Smo440203	No alias	Chromatin organisation.chromatin remodeling...	0.07	Archaeplastida
Smo440558	No alias	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana	0.02	Archaeplastida
Smo440815	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.09	Archaeplastida
Zm00001e010722_P005	No alias	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e013442_P001	No alias	chromatin remodeling factor (Snf2)	0.07	Archaeplastida
Zm00001e017643_P001	No alias	chromatin remodeling factor (Iswi)	0.05	Archaeplastida
Zm00001e026331_P001	No alias	chromatin remodeling factor (Iswi)	0.16	Archaeplastida
Zm00001e036737_P001	No alias	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Zm00001e040406_P002	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043044	ATP-dependent chromatin remodeling	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	Neighborhood
CC	GO:0000178	exosome (RNase complex)	IEP	Neighborhood
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0004402	histone acetyltransferase activity	IEP	Neighborhood
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0006475	internal protein amino acid acetylation	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016573	histone acetylation	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0017025	TBP-class protein binding	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0070568	guanylyltransferase activity	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
CC	GO:1905354	exoribonuclease complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	197	465
IPR015195	SLIDE	893	1003
IPR001650	Helicase_C	488	600
IPR015194	ISWI_HAND-dom	749	831

External Links

No external refs found!

Solyc01g067390.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation