AMTR_s00021p00235220 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.236

Description : Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic OS=Arabidopsis thaliana

Gene families : OG0000346 (Archaeplastida) Phylogenetic Tree(s): OG0000346_tree ,
OG_05_0009220 (LandPlants) Phylogenetic Tree(s): OG_05_0009220_tree ,
OG_06_0011943 (SeedPlants) Phylogenetic Tree(s): OG_06_0011943_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00021p00235220
Cluster	HCCA: Cluster_144

Target	Alias	Description	ECC score	Gene Family Method
AT3G02450	No alias	cell division protein ftsH, putative	0.04	Archaeplastida
AT3G16290	EMB2083	AAA-type ATPase family protein	0.03	Archaeplastida
AT4G23940	No alias	FtsH extracellular protease family	0.05	Archaeplastida
Cpa\|evm.model.tig00021179.74	No alias	ATP-dependent zinc metalloprotease FTSH 1, chloroplastic...	0.02	Archaeplastida
Cpa\|evm.model.tig00022075.42	No alias	ATP-dependent zinc metalloprotease FTSH, chloroplastic...	0.01	Archaeplastida
GSVIVT01017029001	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.04	Archaeplastida
GSVIVT01019239001	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.04	Archaeplastida
GSVIVT01036484001	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.03	Archaeplastida
MA_10435856g0010	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.03	Archaeplastida
MA_793260g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp6g15080.1	No alias	component FtsHi of protein translocation ATPase motor complex	0.02	Archaeplastida
Pp3c17_20370V3.1	No alias	AAA-type ATPase family protein	0.03	Archaeplastida
Pp3c22_8480V3.1	No alias	FtsH extracellular protease family	0.02	Archaeplastida
Pp3c4_20860V3.1	No alias	cell division protein ftsH, putative	0.03	Archaeplastida
Smo152929	No alias	Protein degradation.peptidase families.metallopeptidase...	0.02	Archaeplastida
Smo166773	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.03	Archaeplastida
Smo98591	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.02	Archaeplastida
Solyc03g046340.3.1	No alias	component FtsHi of protein translocation ATPase motor complex	0.03	Archaeplastida
Solyc08g082530.4.1	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.05	Archaeplastida
Solyc12g044400.3.1	No alias	component FtsHi of protein translocation ATPase motor complex	0.02	Archaeplastida
Zm00001e007868_P001	No alias	component FtsHi of protein translocation ATPase motor complex	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity	IEP	Neighborhood
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
MF	GO:0004743	pyruvate kinase activity	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004828	serine-tRNA ligase activity	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006278	RNA-dependent DNA biosynthetic process	IEP	Neighborhood
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
BP	GO:0006434	seryl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006470	protein dephosphorylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016073	snRNA metabolic process	IEP	Neighborhood
BP	GO:0016180	snRNA processing	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0030955	potassium ion binding	IEP	Neighborhood
BP	GO:0031123	RNA 3'-end processing	IEP	Neighborhood
MF	GO:0031420	alkali metal ion binding	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034472	snRNA 3'-end processing	IEP	Neighborhood
BP	GO:0034477	U6 snRNA 3'-end processing	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0043628	ncRNA 3'-end processing	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
MF	GO:0070568	guanylyltransferase activity	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0071897	DNA biosynthetic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000642	Peptidase_M41	709	935
IPR003959	ATPase_AAA_core	506	646

External Links

No external refs found!

AMTR_s00021p00235220 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation