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  5. Solyc01g079530.4.1

Solyc01g079530.4.1


Description : RING-v-class E3 ligase


Gene families : OG0000436 (Archaeplastida) Phylogenetic Tree(s): OG0000436_tree ,
OG_05_0009096 (LandPlants) Phylogenetic Tree(s): OG_05_0009096_tree ,
OG_06_0007079 (SeedPlants) Phylogenetic Tree(s): OG_06_0007079_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g079530.4.1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AT1G02610 No alias RING/FYVE/PHD zinc finger superfamily protein 0.07 Archaeplastida
GSVIVT01011789001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01028110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.09 Archaeplastida
Gb_37740 No alias RING-v-class E3 ligase 0.04 Archaeplastida
LOC_Os01g49280.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
LOC_Os11g38800.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Mp8g15410.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Solyc01g020190.2.1 No alias Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis... 0.04 Archaeplastida
Solyc05g008390.3.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Solyc06g069780.4.1 No alias RING-v-class E3 ligase 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 21 68
IPR022143 DUF3675 74 199
No external refs found!